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Commit f79c9bb7 authored by AndiMajore's avatar AndiMajore
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commented out depricated functions

parent 3e9aebe5
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...@@ -31,55 +31,55 @@ class DataPopulator: ...@@ -31,55 +31,55 @@ class DataPopulator:
for disorder in models.Disorder.objects.all(): for disorder in models.Disorder.objects.all():
self.disorders[disorder.mondo_id]=disorder self.disorders[disorder.mondo_id]=disorder
def populate_proteins(self) -> int: # def populate_proteins(self) -> int:
""" Populates the Protein table in the django database. # """ Populates the Protein table in the django database.
Handles loading the data and passing it to the django database # Handles loading the data and passing it to the django database
#
Returns: # Returns:
int: Count of how many proteins were added # int: Count of how many proteins were added
""" # """
df = DataLoader.load_proteins() # df = DataLoader.load_proteins()
for _, row in df.iterrows(): # for _, row in df.iterrows():
self.proteins[row['entrez_id']] = models.Protein( # self.proteins[row['entrez_id']] = models.Protein(
uniprot_code=row['protein_ac'], # uniprot_code=row['protein_ac'],
gene=row['gene_name'], # gene=row['gene_name'],
entrez=row['entrez_id'], # entrez=row['entrez_id'],
protein_name=row['protein_name']) # protein_name=row['protein_name'])
self.uniprot_to_ensembl[row['protein_ac']] = row['entrez_id'] # self.uniprot_to_ensembl[row['protein_ac']] = row['entrez_id']
self.gene_name_to_ensembl[row['gene_name']].add(row['entrez_id']) # self.gene_name_to_ensembl[row['gene_name']].add(row['entrez_id'])
#
models.Protein.objects.bulk_create(self.proteins.values()) # models.Protein.objects.bulk_create(self.proteins.values())
return len(self.proteins) # return len(self.proteins)
#
def populate_disorders(self) -> int: # def populate_disorders(self) -> int:
""" Populates the Disorder table in the django database. # """ Populates the Disorder table in the django database.
Handles loading the data and passing it to the django database # Handles loading the data and passing it to the django database
#
Returns: # Returns:
int: Count of how many disorders were added # int: Count of how many disorders were added
""" # """
df = DataLoader.load_disorders() # df = DataLoader.load_disorders()
for _, row in df.iterrows(): # for _, row in df.iterrows():
self.disorders[row['mondo_id']] = models.Disorder( # self.disorders[row['mondo_id']] = models.Disorder(
mondo_id=row['mondo_id'], # mondo_id=row['mondo_id'],
label=row['label'], # label=row['label'],
icd10=row['icd10'] # icd10=row['icd10']
) # )
models.Disorder.objects.bulk_create(self.disorders.values()) # models.Disorder.objects.bulk_create(self.disorders.values())
return len(self.disorders) # return len(self.disorders)
#
def populate_drugs(self): # def populate_drugs(self):
df = DataLoader.load_drugs() # df = DataLoader.load_drugs()
for _, row in df.iterrows(): # for _, row in df.iterrows():
drug_id = row['drug_id'] # drug_id = row['drug_id']
drug_name = row['drug_name'] # drug_name = row['drug_name']
drug_status = row['drug_status'] # drug_status = row['drug_status']
self.drugs[drug_id] = models.Drug( # self.drugs[drug_id] = models.Drug(
drug_id=drug_id, # drug_id=drug_id,
name=drug_name, # name=drug_name,
status=drug_status) # status=drug_status)
models.Drug.objects.bulk_create(self.drugs.values()) # models.Drug.objects.bulk_create(self.drugs.values())
return len(self.drugs) # return len(self.drugs)
def populate_expessions(self): def populate_expessions(self):
self.init_proteins() self.init_proteins()
......
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