Commits · 3c1380107c240e8c99096fa23b5195566f4884bf · Cosy-Bio / Drugst.One / backend

Jul 12, 2022

remove unconnected nodes from gt files · 3c138010

AndiMajore authored 2 years ago

Former-commit-id: f8f42ee13544d2387b6737e92d394c4e3df4d656 [formerly 64b002b78d5ef4a968af1fded1807d49556c0e71]
Former-commit-id: fe6a30fc6294c64e17a1fb347264fe9ac9f1da66

3c138010

Jul 11, 2022

removed type · 8d419dcc

AndiMajore authored 2 years ago

Former-commit-id: 057dca216e90e4cdf6785f754e90f1ab45a37482 [formerly d9cf71af8ecf43558328e20aec6b3c1cc6310c58]
Former-commit-id: 4efaf5f193769629e8b7916801eded09c17d4e9b

8d419dcc

updated nedrex package; added get_licence route · 72ab6ce8

AndiMajore authored 2 years ago

Former-commit-id: a743ba22aa56ed04aff774d9b7d8c73dd7c874f4 [formerly 02a7516a5513513befb6801b03a1d8c01603a821]
Former-commit-id: 3726ab669ce558dce8f062d62ff0063fd5751afe

72ab6ce8

Jul 09, 2022

small update but not all fixed · 59d8febe

AndiMajore authored 2 years ago

Former-commit-id: 9a544d3f4e0d6988be142678c41e287e4e669685 [formerly a54f02195d5fcb8eaae8a961cd91e5dc5a2305d5]
Former-commit-id: 7afc43bd1da646344f8fea1e0e6a3702c4995c72

59d8febe

Jul 08, 2022

fixing quick and super start options · d0654e51

AndiMajore authored 2 years ago

Former-commit-id: f9b708c980c22a69d8d278b18746fa6e4dc0926f [formerly d723b2b2a56250e28389f51e00aa7b1cf3fec4e4]
Former-commit-id: b8187f101c13fe2852638cf69cf188fd52031b63

d0654e51

fixed network export · 5b9ff43a

AndiMajore authored 2 years ago

Former-commit-id: 26baf812bc6002ee6fb5ab0ef496654a98852ac0 [formerly fedff5217fe893167fe9c60d6491bebd65c06354]
Former-commit-id: 0ffa6ecf96f2f9c15364dc47098843f0c887d2d9

5b9ff43a

enabled update on start · 2e7b5c6d

AndiMajore authored 2 years ago

Former-commit-id: 45a6b84f6f72bd70d37048ffec271214276d6d9f [formerly a6908a67d5b269ec65fbee5d16f5364bcfa60865]
Former-commit-id: d72424de37676867824ed8c910cf6164f5b7f95a

2e7b5c6d

updated graph files · cfd0e0a6

AndiMajore authored 2 years ago

Former-commit-id: bd1505831dfcdf4c5d95017cf4a241472f3a022f [formerly bce4cc1712b226c19dd33f8c8dda15882387cfd6]
Former-commit-id: 604d52025aecc122b79456de7fb4454155e7b85f

cfd0e0a6

small fixes and cleanup · 6108fc14

AndiMajore authored 2 years ago

Former-commit-id: 2ccaabaf585c5540bea64d18b719c3b7e5675331 [formerly 4dbe0233233f33247995351d45ab2546b37ff9ca]
Former-commit-id: 14010f3b1d26020361146c1987d9e2bf7115b05e

6108fc14

Jul 07, 2022

tried to simplify read_graph_tool_graph · 62f066c9

AndiMajore authored 2 years ago

Former-commit-id: b30ddcce5a74933259b2d844f3576058274aa881 [formerly 3ffcd24d7bd7ab56f2a38772eb665da6ff7af3c6]
Former-commit-id: 5a3c12455d37f3ad1b696e60d178c5f2a4e66e3e

62f066c9

trying to fix read_graph_tool_graph.py · 22713704

AndiMajore authored 2 years ago

Former-commit-id: 83be1a42848236fee006cbe97f474e412fb0f325 [formerly 8dc1a3c2c508a55c357c13d39bc02a22169ddfdf]
Former-commit-id: 67e318f196be47c48e19bab15942eef563bb80dd

22713704

fixed entrez and ensembl based gene mapping · 258aa361

AndiMajore authored 2 years ago

Former-commit-id: 062e5930ca636355aae9e8cee146065b2dc2280b [formerly cc56eff0767fbca323b9e3b712be544ad00dea86]
Former-commit-id: 1a42ce84dac905978aa14406dfe68821f790b7ad

258aa361

adjusted startup conditions · dc908358

AndiMajore authored 2 years ago

Former-commit-id: 221087cd072a74c0f7c1ba5b0b7cecc61624373e [formerly 4032a8ee4582546a7baede2e6033679f2e922a58]
Former-commit-id: 0bc728217010d747a8ed5f425cbb065fd2bba8c9

dc908358

basic adjacency calls checked · 0365b931

AndiMajore authored 2 years ago

Former-commit-id: f339fe90455c5a08947506de7d39d6137eee031f [formerly 0aace5168588fbcc985194394deebd1e92d5f442]
Former-commit-id: 86a31f5b29f95ef9a3a35f54f4ae33b12172504a

0365b931

clean up · 178bddde

AndiMajore authored 2 years ago

Former-commit-id: 74735839aa24273f1947a1430d59e1c2840b14c4 [formerly 1654998ad4af0e0f8b499a3ed37c23beb3c16c45]
Former-commit-id: a54f3fe1b3676883e2f0c9c0ddd0e66b9e90ba7c

178bddde

Jul 06, 2022

precomputed network files · 1c383c6e

AndiMajore authored 2 years ago

Former-commit-id: 47918164504f861ee42f0a3a67b4885c66e99870 [formerly b61514f4b82e0781e65acfc0153fdadd0db77b74]
Former-commit-id: 84aed50d8f61ef526add4515d69eb321abc595d7

1c383c6e

Jul 05, 2022

clean up and small fixes · 4e5aa5d6

AndiMajore authored 2 years ago

Former-commit-id: 8b9b1acff6bc1f677d8b0b37c30f31cd7306fe6c [formerly 86383ed1e25dddd845b0080be00df464c6bd3322]
Former-commit-id: 348c168feb297f83db240a81c3ea7113d40d473e

4e5aa5d6

fixed make_graphs; added individual source datasets from nedrex · e5962ad1

AndiMajore authored 2 years ago

Former-commit-id: 640d8907dc42bfb580198df3b9604522b7217ad7 [formerly 3bc93bec4b541af7214304f3ac9aea93432a419a]
Former-commit-id: 3c2f33d7f54d45181aecdb86da82770b0e8d9674

e5962ad1

Jul 04, 2022

fixed updating · 005a116f

AndiMajore authored 2 years ago

Former-commit-id: 90a4ec7fbd1de2422fc81c4263021fabe32dae9b [formerly 67f3264389308e4cfea190d8cad69d8c0a72cfcb]
Former-commit-id: 1d173d62359c0be15b636fc8dcc93de2bd560234

005a116f

added update and autoupdate functions · 71505df5

AndiMajore authored 2 years ago

Former-commit-id: 1452720df605af5280396874a2c4f41a06b291ef [formerly c5ffaf4e6fd037c3fd9e0a0f6d71096e6037d754]
Former-commit-id: 0186ba3f7cd4e20538fb0625ac272cae9844a75d

71505df5

Jul 01, 2022

fixed persistence issues of db and lock file · 027a9b28

AndiMajore authored 2 years ago

Former-commit-id: 02d9853749ce0e99abc194e3616a7b5fcb1d96bc [formerly 6de057f8b05c5be8c1c68c554abcae2224b6e9e3]
Former-commit-id: b95f827c20f34c017082fcd93c0bf8ff477c22fe

027a9b28

nedrex integration mainly done · 26dbb805

AndiMajore authored 2 years ago

Former-commit-id: 33d39f0222ba087347ba9a8f97bb606eb351c631 [formerly dcffa3e23c2b52efecc1a62f84a9196e7244b70e]
Former-commit-id: e9dd8d7283b64d526a514d47337f05dd1523a60f

26dbb805

Jun 30, 2022

python_nedrex code (for now) · 89aec55b

AndiMajore authored 2 years ago

Former-commit-id: 744ca0bd65be53aa741e5a48d504c10a7becb6b4 [formerly 12f2f27f7310d442dd9ba7e5490ceec031a43317]
Former-commit-id: c8caffc2fa2847f96b478eabafca2c889853f792

89aec55b

adjustments to production compose yml · 6395c91e

AndiMajore authored 2 years ago

Former-commit-id: 237b0bd4380744288e2879b9323b45bdea16ebf8 [formerly 97f9482cef3619c580b95867742672a4c5a92837]
Former-commit-id: 626491999e87ce6622c9b80f2f9484cb31849812

6395c91e

nedrex integration and cleanup progressed · db3da4ac

AndiMajore authored 2 years ago

Former-commit-id: e064c2ed7ee312a0e6efb5ce07125e7cd2c38fa7 [formerly ee0efdbd94033f23904dae682523e5f0adf5fac7]
Former-commit-id: 2f82b1ea117749164c5a9241805dfe160cf1effb

db3da4ac

Jun 29, 2022

db setup mostly done · e1ddbde5

AndiMajore authored 2 years ago

Former-commit-id: 606cfe69f8d55b6dc2828c5c89a5457df455f394 [formerly 6d90c03baaa75b535c9d6d69fa1bbf00eeb99ddf]
Former-commit-id: df98a3c171c12803ff3246c6b0871b315d93b172

e1ddbde5

Jun 27, 2022

commented out depricated functions · c6f19b69

AndiMajore authored 2 years ago

Former-commit-id: 75f674e8de9ededb76d0ba425154c45be81dad9d [formerly b8f6a9d8f9d16d42d52b2a56ea4ae26d916b2c74]
Former-commit-id: cb2da46dc6779925b86c0cf178c24ddd896ccfd1

c6f19b69

fixed automigration issue; activated nedrex based protein, disorder, drug import · 9a05b483

AndiMajore authored 2 years ago

Former-commit-id: 29eb95b6491c6db920c34400d4531bd62877baa1 [formerly 532279253490c6d6e903e43fd77fd1a6977157f2]
Former-commit-id: df106b3875c66c5dd6f07d5ef336f579182b85b7

9a05b483

Jun 24, 2022

removed module file · 222231a0

AndiMajore authored 2 years ago

Former-commit-id: 48c08798baa9f29a97de21370e064cfbefe83f84 [formerly a147e273d739122a722a4a9a0f78bcdb607f3642]
Former-commit-id: ed0cb6561aa56c8512bcb53a81e309e872037b2b

222231a0

Jun 23, 2022

added nedrex_python support and import for protein table · e70bba60

AndiMajore authored 2 years ago

Former-commit-id: 1c68634f15ccb66ef4804394bae4f79e2afb39d7 [formerly 6571f711d6b4dc06abe8b04b32e560850f759f5d]
Former-commit-id: ba0caed5921ec5463bedc96ef2fd2e2f48f0f1d2

e70bba60

db init cleanup and significant speedup · ca0e5a7b

AndiMajore authored 2 years ago

Former-commit-id: b98d1951d6d94f03ffe97486b492d734a2a4258e [formerly 88e844cb12d9d9e129f9b7f50856d11124a4a475]
Former-commit-id: 66631e2e8e954e5144472bd8ffb170ed4858c30c

ca0e5a7b

Jun 22, 2022

fixing PDI and PDi import · e46ee3df

AndiMajore authored 2 years ago

Former-commit-id: 4c5f598598349cfbd677a39fa89a0ca1a13778cd [formerly c3f6143e657675ff44956af0e17664b008c4b78d]
Former-commit-id: 86ce1beb429cf87466b0ce5abbfbd61a2cbcea34

e46ee3df

switched to bulk inserts · 052fca65

AndiMajore authored 2 years ago

Former-commit-id: e597062bdda4bb05012c8651bb5a5c56400224cb [formerly 13fab6dfcbe97065258dfaa5092ef5cf8231f901]
Former-commit-id: 77d907ddff45e4e927d2b7a400559e3298510fed

052fca65

first try of bulk import · 47f867fe

AndiMajore authored 2 years ago

Former-commit-id: f2ed7bfabe121faed6bd0327c688e9e6172d7915 [formerly 045ef18f1f4c43c0122c51eedd5fad6902dd8cbe]
Former-commit-id: ec2aba86959f1f44128dd6cfcc6a8a47cf43a199

47f867fe

May 24, 2022

disable tls for testing gitlab runner · 96718b91

Hartung, Michael authored 2 years ago

Former-commit-id: 50449d3a1e4988d60c4da1180a57b58e3c13c4ac [formerly db39a29025cd4aa76e3b641bcad75b384c0deac4]
Former-commit-id: e9fa77c39563f2c5511d558efd6caa67a7837733

96718b91

linting · f720cf37

Hartung, Michael authored 2 years ago

Former-commit-id: 518fbcf8e10439aa9563ecb384e3e56a39e59b40 [formerly 37cfc20c59649b75f9055f75339076a71ba41e3e]
Former-commit-id: bd9427c3f7e50a8e13d52198f119c6f7414fffa2

f720cf37

linting · 0369c43b

Hartung, Michael authored 2 years ago

Former-commit-id: 84c054cc23d31ce93d35240f2e8802c41b6c7288 [formerly fc7df1df8b9c8c79c4100d8445a62f7005d377c4]
Former-commit-id: a3fe5d04dc036bb7b9e73eb5119184d82b465879

0369c43b

linting · e013c733

Hartung, Michael authored 2 years ago

Former-commit-id: dc719c26b78a9a2f828ca3770764fff762447a7b [formerly 96fd866e1d719709d5bf30ac1d590ef35d26de1d]
Former-commit-id: 172fe0905667a5ca02cb4dfbfd615a8462f5d16b

e013c733

renaming netex to drugstone and celery integration (with flower and celery-beat) · 7b6550fc

Hartung, Michael authored 2 years ago

Former-commit-id: 052fe34e6eded1074e13f95dfc24e3974daaf86d [formerly 5990bcf48d8adfc0e903da2e7a7f156728e1520f]
Former-commit-id: f2342f0a48d6d3ca54333c04f7cf6c633fb0359a

7b6550fc

May 16, 2022

renaming netex to drugstone · c1279300

Hartung, Michael authored 2 years ago

Former-commit-id: ba707324e385ba1b4497ba529f4b7417e5d1a25b [formerly 1a5ec010cd13a9aba205a306fd22c3ea04d6fee1]
Former-commit-id: 110966177ae1f158502d9823609078d37e55c679

c1279300