Commits · 6d2aecf7d4974a630e4285afd06757f1e3e3c2ec · Cosy-Bio / Drugst.One / backend

Nov 04, 2022

AndiMajore authored 2 years ago

Former-commit-id: 8fada340a2a8482531e79e790c18765f015bf63c [formerly 5d66e94c4d708279e19395047d90b1625312f4d8]
Former-commit-id: dbe69507c6be18e7ff8fb0511b8fe91558f2143a

6d2aecf7

try to fix tissue expression route · 3aba2228

AndiMajore authored 2 years ago

Former-commit-id: aea16b28f5572fc40afa41bd0e347247780d1611 [formerly 9d06c8f9dcdbfb6fead6cd6b7a14f5bc0dbdee77]
Former-commit-id: 406f05ea57d69030a7659280633546ba612217e8

3aba2228

try to fix tissue expression route · ac64a8ce

AndiMajore authored 2 years ago

Former-commit-id: ce36ed579d6db16b9325d3f75d2d3b9f8e5421ac [formerly 05ebeee6e00b7ee69d912087f4a128f32aec02da]
Former-commit-id: 62181610c82c73f04deaafdf23b67d14db0661c0

ac64a8ce

try to fix tissue expression route · 1db389eb

AndiMajore authored 2 years ago

Former-commit-id: 493d45a249a8d3ab16c426bc2fce79a9ab4d9beb [formerly 280a6c05eb0ae76a1e6e8112d3495fed6e788047]
Former-commit-id: 78bbfbb490a2fd74c69f015497074a65b3cba175

1db389eb

changing expression route from get to post to fix current incompatibility · 55edc95a

AndiMajore authored 2 years ago

Former-commit-id: 62d025ae2f65d8ab0e4a8ab693b2d920bb63cae0 [formerly 41628282e7fb29e85f7763f3d15d4a278e0108ac]
Former-commit-id: 1d3e0abaccf8d18410b6c70e3d627d57678cb10b

55edc95a

fixing max_tissue_expression route · ccd0f7f6

AndiMajore authored 2 years ago

Former-commit-id: 9ad25fce42fe06dc99e88bf0590f8ef4db6031ef [formerly be94ed3c40897da95602622f3b42f1ab36d3591d]
Former-commit-id: d78d98e869e73cd7a9ec48bf29f0d9a03076f509

ccd0f7f6

fixing max_tissue_expression route · 2cd18548

AndiMajore authored 2 years ago

Former-commit-id: 280575bda4a06f7edad882aac64889cf4a63fa6e [formerly 28c1f02f5b6da91f79c60b05a367b63ab0bc83d6]
Former-commit-id: 2fa4fc9f776149469ca63a18a1a66546db7b4020

2cd18548

added max tissue expression route · bdfa976a

AndiMajore authored 2 years ago

Former-commit-id: 719fb6d54764b168d8364fd8259c7f7a7d6024cc [formerly beec42a6879a64f93c67b0af55255f3ecf4ab26b]
Former-commit-id: 3b086a2d13a41b9b030d5f590184cc11dba8cf1e

bdfa976a

Oct 28, 2022

fixed issue in make_graphs where no entrez networks were prebuild · 34a9d905

AndiMajore authored 2 years ago

Former-commit-id: 8f47f0d569e2a0c6bec9ce3a4f1c9a503408b3e7 [formerly 8e69573cb1b6be1c391e5274da373a01a3de24f7]
Former-commit-id: beee089e232617c8933388b7cf60de1ffcb36957

34a9d905

changed nedrex api routes; fixed protein table download · 66288004

AndiMajore authored 2 years ago

Former-commit-id: 060e468aae542e362615637a985d035f5e550b9d [formerly 71267798c6c0dbf6f3c68e69a834066dc54bc782]
Former-commit-id: 3e5884f855c73eb9db534a3792e9ec971934d00b

66288004

fixed json download · 2a238c34

AndiMajore authored 2 years ago

Former-commit-id: 27cd4a3c32de0fb947169a8e33faa0e8e3a07eba [formerly 4729717f5e695b8228221b6a861d042327eabd12]
Former-commit-id: 33e465a1c42556c6ed13d98aa5e1e7e88299d573

2a238c34

Aug 25, 2022

small renaming · eede4857

AndiMajore authored 2 years ago

Former-commit-id: 1315ea00e0ede006b85be27b96d15dd4fceb5d4b [formerly 8f6c021350bf3953416c8251cf8d035bf6cf46f4]
Former-commit-id: 30a6870d2c5936d39a93d18a8dd0510d946c9df1

eede4857

drugbank drug-disease dataset is now correctly labeled as licenced dataset · 0858f0f4

AndiMajore authored 2 years ago

Former-commit-id: 1ff1cb4ea9b9afcaf441b76189d4f9ef2a8f03fb [formerly 807af46d6d940333fa393d19ae660ae318d1b560]
Former-commit-id: b0730789b8f14eb1f5fe77079df4b7538f590824

0858f0f4

Aug 23, 2022

minor change · 7c50553d

AndiMajore authored 2 years ago

Former-commit-id: 468e77e9303ccaf216fd7c9ce91c22ad7b0e439a [formerly 9d0e80ee2af22516a3d674bd4faee8e53fcbff7b]
Former-commit-id: 6afadfa790ddf05ab755f246f13e7658c0b74731

7c50553d

Aug 01, 2022

fixed issue with strange gene name for proteins; fixed issue with empty string symbol for protein · b58171ef

AndiMajore authored 2 years ago

Former-commit-id: 7c3269f46e87b959d7eca3040a1770a726c177b8 [formerly 9fe07622f02cc25506681f8c037c683613fcfc94]
Former-commit-id: 9216f0d0e81abdb11f965aa2d6b6c92be477f6db

b58171ef

Jul 29, 2022

fixed ensg mode; fixed auto edges on results; fixed issue with dataset pairs on network generation · aa33276a

AndiMajore authored 2 years ago

Former-commit-id: ce57507f35aeb685d6de0a6457a56b2e5c42767e [formerly 8a98641884c6a73ab8554d04be44e7ce4be5acc0]
Former-commit-id: 723d1ac38502ab852a66edfddd0804dcdcef3cdf

aa33276a

analysis on analysis working properly · 1ef20511

AndiMajore authored 2 years ago

Former-commit-id: fb902939317d198792f948c63cf948a0f1a13ca6 [formerly 6d3e3bebb7185a47f8605d7314c7e297bc00e0b1]
Former-commit-id: 5d15ef555c3b3f9dc5541b941874548fb3b59d1c

1ef20511

Jul 26, 2022

small change · 0ac92f4f

AndiMajore authored 2 years ago

Former-commit-id: bbd6a215fb6bcacb11055ea133d1f48cbe6977cb [formerly 6af73d4c911424459044c280345fc46c3f08704b]
Former-commit-id: 83da46dec701ee4855a0d3b341c9771bc5b978ae

0ac92f4f

added get_datasets route · 28ab2cfb

AndiMajore authored 2 years ago

Former-commit-id: b13abb358a6e5d4771856491e817258c73c51a87 [formerly b15f8afaa0bba49443b57218fb8109e928f3c605]
Former-commit-id: c2a2e19124f3acf697e0ac4037cf47c004c2b898

28ab2cfb

Jul 25, 2022

adjusted id-space wise analysis preparation and execution · efe65a77

AndiMajore authored 2 years ago

Former-commit-id: fb4d5146205053e00478b0de87642b09d692bc5a [formerly 45a041e729435626ada319eab340b8d962993623]
Former-commit-id: ed383169c0bf47eb77541dfc30c69e1894350858

efe65a77

Jul 21, 2022

changed to new node schema · 02516d89

AndiMajore authored 2 years ago

Former-commit-id: 282910642bb91c4db37a0f20283c9af18c874eae [formerly b57d24f8df32f31d06ddee3e87e0fec8c18812d6]
Former-commit-id: b38ca8e6c2532dc4d96a68c6c6af434360428c5b

02516d89

connect them button · 487c1964

Hartung, Michael authored 2 years ago

Former-commit-id: dbe032b41e47f83070fb9bc374e6b615a5725f35 [formerly 7715be21250f4ab7afb004d6e109353217f1de91]
Former-commit-id: d71dbef4d0dc2be8ccc65fe7446762a5ebae497f

487c1964

Jul 19, 2022

handling protein nodes now with multiple ids outside of main id space · ff8f093b

AndiMajore authored 2 years ago

Former-commit-id: 6244c171b0ec97affbc2992e4e568b6d9d6c22d6 [formerly 8eb44b9fb87e1ca95eb0c09c98e7253b1f0ce702]
Former-commit-id: 6e33edc763b4f47b04180e818f68097887204133

ff8f093b

Jul 15, 2022

added licenced vs nonlicenced distinction · 87f3cafa

AndiMajore authored 2 years ago

Former-commit-id: 10023dad6f6a64d6f3827a051cb64f4601a8443d [formerly 14665e8b53d40b7c366a2c8f0bddd793880d9cdf]
Former-commit-id: ece28167227b6a7ac099ac545df826495d004778

87f3cafa

added nedrex package; impoved graph generation; first fixes for must · 9e20ecc4

AndiMajore authored 2 years ago

Former-commit-id: 178467a30517d121e29d95ca425816ae224b41c7 [formerly c1f7384edc564f1f1e74b79a0ef6f54e9c5f103e]
Former-commit-id: 1d5c3b773ad715dc51193417ecdcd4baf802b75a

9e20ecc4

separate groups from config in standalone · c39d629c

Hartung, Michael authored 2 years ago

Former-commit-id: eafba9ca11bb450db04eaaed164d95a22f3d6c7f [formerly 5e7333b22a51b39cd844ef2073c5280166e5a3a3]
Former-commit-id: c09205bd561cc1bc0c2dc6f38743aeb42441a3d3

c39d629c

Jul 12, 2022

remove unconnected nodes from gt files · 3c138010

AndiMajore authored 2 years ago

Former-commit-id: f8f42ee13544d2387b6737e92d394c4e3df4d656 [formerly 64b002b78d5ef4a968af1fded1807d49556c0e71]
Former-commit-id: fe6a30fc6294c64e17a1fb347264fe9ac9f1da66

3c138010

Jul 11, 2022

removed type · 8d419dcc

AndiMajore authored 2 years ago

Former-commit-id: 057dca216e90e4cdf6785f754e90f1ab45a37482 [formerly d9cf71af8ecf43558328e20aec6b3c1cc6310c58]
Former-commit-id: 4efaf5f193769629e8b7916801eded09c17d4e9b

8d419dcc

updated nedrex package; added get_licence route · 72ab6ce8

AndiMajore authored 2 years ago

Former-commit-id: a743ba22aa56ed04aff774d9b7d8c73dd7c874f4 [formerly 02a7516a5513513befb6801b03a1d8c01603a821]
Former-commit-id: 3726ab669ce558dce8f062d62ff0063fd5751afe

72ab6ce8

Jul 09, 2022

small update but not all fixed · 59d8febe

AndiMajore authored 2 years ago

Former-commit-id: 9a544d3f4e0d6988be142678c41e287e4e669685 [formerly a54f02195d5fcb8eaae8a961cd91e5dc5a2305d5]
Former-commit-id: 7afc43bd1da646344f8fea1e0e6a3702c4995c72

59d8febe

Jul 08, 2022

fixing quick and super start options · d0654e51

AndiMajore authored 2 years ago

Former-commit-id: f9b708c980c22a69d8d278b18746fa6e4dc0926f [formerly d723b2b2a56250e28389f51e00aa7b1cf3fec4e4]
Former-commit-id: b8187f101c13fe2852638cf69cf188fd52031b63

d0654e51

fixed network export · 5b9ff43a

AndiMajore authored 2 years ago

Former-commit-id: 26baf812bc6002ee6fb5ab0ef496654a98852ac0 [formerly fedff5217fe893167fe9c60d6491bebd65c06354]
Former-commit-id: 0ffa6ecf96f2f9c15364dc47098843f0c887d2d9

5b9ff43a

small fixes and cleanup · 6108fc14

AndiMajore authored 2 years ago

Former-commit-id: 2ccaabaf585c5540bea64d18b719c3b7e5675331 [formerly 4dbe0233233f33247995351d45ab2546b37ff9ca]
Former-commit-id: 14010f3b1d26020361146c1987d9e2bf7115b05e

6108fc14

Jul 07, 2022

fixed entrez and ensembl based gene mapping · 258aa361

AndiMajore authored 2 years ago

Former-commit-id: 062e5930ca636355aae9e8cee146065b2dc2280b [formerly cc56eff0767fbca323b9e3b712be544ad00dea86]
Former-commit-id: 1a42ce84dac905978aa14406dfe68821f790b7ad

258aa361

basic adjacency calls checked · 0365b931

AndiMajore authored 2 years ago

Former-commit-id: f339fe90455c5a08947506de7d39d6137eee031f [formerly 0aace5168588fbcc985194394deebd1e92d5f442]
Former-commit-id: 86a31f5b29f95ef9a3a35f54f4ae33b12172504a

0365b931

clean up · 178bddde

AndiMajore authored 2 years ago

Former-commit-id: 74735839aa24273f1947a1430d59e1c2840b14c4 [formerly 1654998ad4af0e0f8b499a3ed37c23beb3c16c45]
Former-commit-id: a54f3fe1b3676883e2f0c9c0ddd0e66b9e90ba7c

178bddde

Jul 05, 2022

clean up and small fixes · 4e5aa5d6

AndiMajore authored 2 years ago

Former-commit-id: 8b9b1acff6bc1f677d8b0b37c30f31cd7306fe6c [formerly 86383ed1e25dddd845b0080be00df464c6bd3322]
Former-commit-id: 348c168feb297f83db240a81c3ea7113d40d473e

4e5aa5d6

fixed make_graphs; added individual source datasets from nedrex · e5962ad1

AndiMajore authored 2 years ago

Former-commit-id: 640d8907dc42bfb580198df3b9604522b7217ad7 [formerly 3bc93bec4b541af7214304f3ac9aea93432a419a]
Former-commit-id: 3c2f33d7f54d45181aecdb86da82770b0e8d9674

e5962ad1

Jul 04, 2022

fixed updating · 005a116f

AndiMajore authored 2 years ago

Former-commit-id: 90a4ec7fbd1de2422fc81c4263021fabe32dae9b [formerly 67f3264389308e4cfea190d8cad69d8c0a72cfcb]
Former-commit-id: 1d173d62359c0be15b636fc8dcc93de2bd560234

005a116f

added update and autoupdate functions · 71505df5

AndiMajore authored 2 years ago

Former-commit-id: 1452720df605af5280396874a2c4f41a06b291ef [formerly c5ffaf4e6fd037c3fd9e0a0f6d71096e6037d754]
Former-commit-id: 0186ba3f7cd4e20538fb0625ac272cae9844a75d

71505df5