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Commit 8386f33d authored by AndiMajore's avatar AndiMajore
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removed ignore_nonseed_baits param from tasks

parent d37aa98a
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src/app/dialogs/launch-analysis/launch-analysis.component.ts
+ 0
− 5
View file @ 8386f33d
...@@ -132,7 +132,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges { ...@@ -132,7 +132,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
parameters.damping_factor = this.trustrankDampingFactor; parameters.damping_factor = this.trustrankDampingFactor;
parameters.include_indirect_drugs = this.trustrankIncludeIndirectDrugs; parameters.include_indirect_drugs = this.trustrankIncludeIndirectDrugs;
parameters.include_non_approved_drugs = this.trustrankIncludeNonApprovedDrugs; parameters.include_non_approved_drugs = this.trustrankIncludeNonApprovedDrugs;
parameters.ignore_non_seed_baits = !this.trustrankIncludeViralNonSeeds;
if (this.trustrankMaxDeg && this.trustrankMaxDeg > 0) { if (this.trustrankMaxDeg && this.trustrankMaxDeg > 0) {
parameters.max_deg = this.trustrankMaxDeg; parameters.max_deg = this.trustrankMaxDeg;
} }
...@@ -141,7 +140,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges { ...@@ -141,7 +140,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
} else if (this.algorithm === 'closeness') { } else if (this.algorithm === 'closeness') {
parameters.include_indirect_drugs = this.closenessIncludeIndirectDrugs; parameters.include_indirect_drugs = this.closenessIncludeIndirectDrugs;
parameters.include_non_approved_drugs = this.closenessIncludeNonApprovedDrugs; parameters.include_non_approved_drugs = this.closenessIncludeNonApprovedDrugs;
parameters.ignore_non_seed_baits = !this.closenessIncludeViralNonSeeds;
if (this.closenessMaxDeg && this.closenessMaxDeg > 0) { if (this.closenessMaxDeg && this.closenessMaxDeg > 0) {
parameters.max_deg = this.closenessMaxDeg; parameters.max_deg = this.closenessMaxDeg;
} }
...@@ -149,7 +147,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges { ...@@ -149,7 +147,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
parameters.result_size = this.closenessResultSize; parameters.result_size = this.closenessResultSize;
} else if (this.algorithm === 'degree') { } else if (this.algorithm === 'degree') {
parameters.include_non_approved_drugs = this.degreeIncludeNonApprovedDrugs; parameters.include_non_approved_drugs = this.degreeIncludeNonApprovedDrugs;
parameters.ignore_non_seed_baits = !this.degreeIncludeViralNonSeeds;
if (this.degreeMaxDeg && this.degreeMaxDeg > 0) { if (this.degreeMaxDeg && this.degreeMaxDeg > 0) {
parameters.max_deg = this.degreeMaxDeg; parameters.max_deg = this.degreeMaxDeg;
} }
...@@ -162,7 +159,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges { ...@@ -162,7 +159,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
parameters.hub_penalty = this.proximityHubPenalty; parameters.hub_penalty = this.proximityHubPenalty;
parameters.result_size = this.proximityResultSize; parameters.result_size = this.proximityResultSize;
} else if (this.algorithm === 'betweenness') { } else if (this.algorithm === 'betweenness') {
parameters.ignore_non_seed_baits = !this.betweennessIncludeViralNonSeeds;
if (this.betweennessMaxDeg && this.betweennessMaxDeg > 0) { if (this.betweennessMaxDeg && this.betweennessMaxDeg > 0) {
parameters.max_deg = this.betweennessMaxDeg; parameters.max_deg = this.betweennessMaxDeg;
} }
...@@ -173,7 +169,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges { ...@@ -173,7 +169,6 @@ export class LaunchAnalysisComponent implements OnInit, OnChanges {
} else if (this.algorithm === 'multisteiner') { } else if (this.algorithm === 'multisteiner') {
parameters.num_trees = this.multisteinerNumTrees; parameters.num_trees = this.multisteinerNumTrees;
parameters.tolerance = this.multisteinerTolerance; parameters.tolerance = this.multisteinerTolerance;
parameters.ignore_non_seed_baits = !this.multisteinerIncludeViralNonSeeds;
if (this.multisteinerMaxDeg && this.multisteinerMaxDeg > 0) { if (this.multisteinerMaxDeg && this.multisteinerMaxDeg > 0) {
parameters.max_deg = this.multisteinerMaxDeg; parameters.max_deg = this.multisteinerMaxDeg;
} }
......
src/index_static.html
+ 2
− 2
View file @ 8386f33d
...@@ -6,8 +6,8 @@ ...@@ -6,8 +6,8 @@
<!-- <base href="/">--> <!-- <base href="/">-->
<!-- <meta name="viewport" content="width=device-width, initial-scale=1.0">--> <!-- <meta name="viewport" content="width=device-width, initial-scale=1.0">-->
<!-- <script type="text/javascript" src="https://unpkg.com/vis-network/standalone/umd/vis-network.min.js"></script>--> <!-- <script type="text/javascript" src="https://unpkg.com/vis-network/standalone/umd/vis-network.min.js"></script>-->
<script src="https://cdn.drugst.one/v1.0.0-rc4/prod/drugstone.js"></script> <script src="https://cdn.drugst.one/v1.0.1/prod/drugstone.js"></script>
<link rel="stylesheet" href="https://cdn.drugst.one/v1.0.0-rc4/prod/styles.css"> <link rel="stylesheet" href="https://cdn.drugst.one/v1.0.1/prod/styles.css">
<!-- <link rel="stylesheet" type="text/css" href="./stylesheets/default-theme.css">--> <!-- <link rel="stylesheet" type="text/css" href="./stylesheets/default-theme.css">-->
</head> </head>
<body> <body>
......
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