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Commit 8d3cb089 authored by AndiMajore's avatar AndiMajore
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fixed selection function issues

parent f0a07a21
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...@@ -29753,7 +29753,7 @@ ...@@ -29753,7 +29753,7 @@
"fs.realpath": "^1.0.0", "fs.realpath": "^1.0.0",
"inflight": "^1.0.4", "inflight": "^1.0.4",
"inherits": "2", "inherits": "2",
"minimatch": "~3.0.5", "minimatch": "^3.1.1",
"once": "^1.3.0", "once": "^1.3.0",
"path-is-absolute": "^1.0.0" "path-is-absolute": "^1.0.0"
} }
...@@ -30080,7 +30080,7 @@ ...@@ -30080,7 +30080,7 @@
"fs.realpath": "^1.0.0", "fs.realpath": "^1.0.0",
"inflight": "^1.0.4", "inflight": "^1.0.4",
"inherits": "2", "inherits": "2",
"minimatch": "~3.0.5", "minimatch": "^3.1.1",
"once": "^1.3.0", "once": "^1.3.0",
"path-is-absolute": "^1.0.0" "path-is-absolute": "^1.0.0"
} }
...@@ -8,7 +8,7 @@ ...@@ -8,7 +8,7 @@
} }
.seed-selection { .seed-selection {
max-height: 600px; max-height: 800px;
} }
.quick-find { .quick-find {
......
...@@ -224,7 +224,7 @@ export class AnalysisService { ...@@ -224,7 +224,7 @@ export class AnalysisService {
} }
}); });
const selectedNodes = new Set(this.selectedItems.keys()); const selectedNodes = new Set(this.selectedItems.keys());
const firstNeighborNodes: Set<string> = new Set(); const firstNeighborNodes: Set<string> = new Set(selectedNodes);
this.networkHandler.activeNetwork.currentViewEdges.forEach(edge => { this.networkHandler.activeNetwork.currentViewEdges.forEach(edge => {
if (selectedNodes.has(edge.from)) { if (selectedNodes.has(edge.from)) {
firstNeighborNodes.add(edge.to); firstNeighborNodes.add(edge.to);
...@@ -235,7 +235,9 @@ export class AnalysisService { ...@@ -235,7 +235,9 @@ export class AnalysisService {
}); });
firstNeighborNodes.forEach(n => { firstNeighborNodes.forEach(n => {
if (mappedNodes[n]) {
wrappers.push(getWrapperFromNode(mappedNodes[n])); wrappers.push(getWrapperFromNode(mappedNodes[n]));
}
}); });
this.addItems(wrappers); this.addItems(wrappers);
} }
...@@ -270,8 +272,10 @@ export class AnalysisService { ...@@ -270,8 +272,10 @@ export class AnalysisService {
selectedNodes.forEach(n => { selectedNodes.forEach(n => {
if (!this.selectedItems.has(n)) { if (!this.selectedItems.has(n)) {
if (mappedNodes[n]) {
wrappers.push(getWrapperFromNode(mappedNodes[n])); wrappers.push(getWrapperFromNode(mappedNodes[n]));
} }
}
}); });
this.addItems(wrappers); this.addItems(wrappers);
} }
......
...@@ -114,38 +114,9 @@ menu<br> ...@@ -114,38 +114,9 @@ menu<br>
<!-- task-id="ks38WxeCSdbXk2cajKACinnUnCHWbf4I" --> <!-- task-id="ks38WxeCSdbXk2cajKACinnUnCHWbf4I" -->
<drugst-one id="netexp1" <drugst-one id="netexp1"
config='{"activateNetworkMenuButtonAdjacentDisorders":false,"activateNetworkMenuButtonAdjacentDrugs":false, "activateNetworkMenuButtonAdjacentDisordersDrugs": false, "licensedDatasets":true}' groups='{"nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
groups='{"nodeGroups":{"protein":{"type":"protein","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Protein","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}' config='{"customEdges":{"default":true, "selectable":false}, "showAdvAnalysisContent":["drug-search", "enrichment-gprofiler", "enrichment-digest", "search-ndex"],"identifier":"symbol","title":"ROBUST output network", "taskDrugName": "Drug Search", "showLegendNodes": true, "showLegendEdges": true, "showSidebar": "left", "showOverview": true, "legendPos": "left", "legendClass": "legend", "showQuery": true, "showItemSelector": true,"showSimpleAnalysis": false,"showAdvAnalysis": true,"showSelection": true,"showTasks": true,"showNetworkMenu": "right","showLegend": true,"showNetworkMenuButtonExpression": true, "showNetworkMenuButtonScreenshot": true,"showNetworkMenuButtonExportGraphml": true,"showNetworkMenuButtonAdjacentDrugs": true,"showNetworkMenuButtonCenter": true,"showConnectGenes": false,"networkMenuButtonAdjacentDrugsLabel": "Drugs","showNetworkMenuButtonAdjacentDisordersProteins": true,"networkMenuButtonAdjacentDisordersProteinsLabel": "Disorders (protein)","showNetworkMenuButtonAdjacentDisordersDrugs": true,"networkMenuButtonAdjacentDisordersDrugsLabel": "Disorders (drug)","showNetworkMenuButtonAnimation": true,"networkMenuButtonAnimationLabel": "Animation", "autofillEdges": false, "physicsOn": false,"useNedrexLicenced": true,"selfReferences": false, "interactionDrugProtein": "NeDRex", "indicationDrugDisorder": "NeDRex","nodeShadow": true,"edgeShadow": true, "algorithms": {"drug": ["trustrank", "closeness", "degree", "proximity"], "drug-target": ["trustrank", "multisteiner", "keypathwayminer", "degree", "closeness", "betweenness"]}, "associatedProteinDisorder": "NeDRex", "nodeGroups":{"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Seed","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Discovered target","shape":"circle"},"foundDrug":{"type":"drug","color":"#F12590","font":{"color":"#000000"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"default":{"color":"#000000","groupName":"default edge"}}}'
network='{"nodes":[{ "id": "ATG16L1", "group": "protein", "label": "ATG16L1" }, network='{"nodes": [{"id": "DEFA1", "group": "gene"}, {"id": "CST6", "group": "gene"}, {"id": "IGFBP2", "group": "gene"}, {"id": "TNFSF8", "group": "gene"}, {"id": "COPRS", "group": "gene"}, {"id": "AGT", "group": "important"}, {"id": "IL6", "group": "important"}, {"id": "A2M", "group": "gene"}, {"id": "NLRP3", "group": "important"}, {"id": "TLR4", "group": "important"}, {"id": "TNFSF9", "group": "gene"}, {"id": "RPL18", "group": "gene"}, {"id": "F5", "group": "gene"}, {"id": "IVL", "group": "gene"}, {"id": "IL6R", "group": "gene"}, {"id": "CPB2", "group": "gene"}, {"id": "CCDC8", "group": "gene"}, {"id": "SERPINB6", "group": "gene"}, {"id": "MBL2", "group": "important"}, {"id": "IL1B", "group": "important"}, {"id": "HIST1H3E", "group": "gene"}, {"id": "IL24", "group": "gene"}, {"id": "GSDMB", "group": "gene"}, {"id": "NOTCH2", "group": "gene"}, {"id": "F2", "group": "important"}, {"id": "CCR5", "group": "important"}, {"id": "SERPINB8", "group": "gene"}, {"id": "KRT1", "group": "gene"}, {"id": "IL1RN", "group": "important"}, {"id": "PLAT", "group": "gene"}, {"id": "URB1", "group": "gene"}, {"id": "FCF1", "group": "gene"}, {"id": "ACE", "group": "important"}, {"id": "THBS3", "group": "gene"}, {"id": "CALML3", "group": "gene"}, {"id": "PSMA5", "group": "gene"}, {"id": "NDUFA3", "group": "gene"}, {"id": "PARK2", "group": "gene"}, {"id": "FANCB", "group": "gene"}, {"id": "SERPINB2", "group": "gene"}, {"id": "KLRG2", "group": "gene"}, {"id": "FAM19A3", "group": "gene"}, {"id": "CRYZL1", "group": "gene"}, {"id": "HEATR1", "group": "gene"}, {"id": "IGHG2", "group": "gene"}, {"id": "C17orf70", "group": "gene"}, {"id": "TINAG", "group": "gene"}, {"id": "RSPRY1", "group": "gene"}, {"id": "TMPRSS11A", "group": "gene"}, {"id": "SLC18A1", "group": "gene"}, {"id": "PSMD1", "group": "gene"}, {"id": "PCDHB15", "group": "gene"}, {"id": "TSR3", "group": "gene"}, {"id": "FGL1", "group": "gene"}, {"id": "C7orf60", "group": "gene"}, {"id": "SSR3", "group": "gene"}, {"id": "REN", "group": "gene"}, {"id": "MYH14", "group": "gene"}, {"id": "TBCK", "group": "gene"}, {"id": "DARS", "group": "gene"}, {"id": "C16orf70", "group": "gene"}, {"id": "DQX1", "group": "gene"}, {"id": "RPL30", "group": "gene"}, {"id": "FBXO30", "group": "gene"}, {"id": "EPPK1", "group": "gene"}, {"id": "LAMA1", "group": "gene"}, {"id": "AP4E1", "group": "gene"}, {"id": "AP4S1", "group": "gene"}, {"id": "HIST1H1B", "group": "gene"}, {"id": "AFP", "group": "gene"}], "edges": [{"from": "DEFA1", "to": "PLAT", "group": "default"}, {"from": "DEFA1", "to": "IGFBP2", "group": "default"}, {"from": "CST6", "to": "FCF1", "group": "default"}, {"from": "CST6", "to": "NOTCH2", "group": "default"}, {"from": "IGFBP2", "to": "GSDMB", "group": "default"}, {"from": "TNFSF8", "to": "F5", "group": "default"}, {"from": "TNFSF8", "to": "TNFSF9", "group": "default"}, {"from": "COPRS", "to": "HIST1H3E", "group": "default"}, {"from": "COPRS", "to": "IL6R", "group": "default"}, {"from": "AGT", "to": "ACE", "group": "default"}, {"from": "AGT", "to": "GSDMB", "group": "default"}, {"from": "AGT", "to": "NDUFA3", "group": "default"}, {"from": "AGT", "to": "REN", "group": "default"}, {"from": "IL6", "to": "IL6R", "group": "default"}, {"from": "A2M", "to": "IL1B", "group": "default"}, {"from": "A2M", "to": "CPB2", "group": "default"}, {"from": "NLRP3", "to": "URB1", "group": "default"}, {"from": "NLRP3", "to": "HIST1H1B", "group": "default"}, {"from": "TLR4", "to": "TNFSF9", "group": "default"}, {"from": "TNFSF9", "to": "KLRG2", "group": "default"}, {"from": "RPL18", "to": "FCF1", "group": "default"}, {"from": "RPL18", "to": "URB1", "group": "default"}, {"from": "F5", "to": "F2", "group": "default"}, {"from": "F5", "to": "CCDC8", "group": "default"}, {"from": "F5", "to": "KLRG2", "group": "default"}, {"from": "IVL", "to": "FCF1", "group": "default"}, {"from": "IVL", "to": "KRT1", "group": "default"}, {"from": "IL6R", "to": "FANCB", "group": "default"}, {"from": "IL6R", "to": "CRYZL1", "group": "default"}, {"from": "IL6R", "to": "C17orf70", "group": "default"}, {"from": "IL6R", "to": "TBCK", "group": "default"}, {"from": "CPB2", "to": "F2", "group": "default"}, {"from": "CPB2", "to": "TINAG", "group": "default"}, {"from": "CCDC8", "to": "HEATR1", "group": "default"}, {"from": "CCDC8", "to": "PSMD1", "group": "default"}, {"from": "CCDC8", "to": "DARS", "group": "default"}, {"from": "SERPINB6", "to": "F2", "group": "default"}, {"from": "SERPINB6", "to": "SERPINB8", "group": "default"}, {"from": "SERPINB6", "to": "TMPRSS11A", "group": "default"}, {"from": "SERPINB6", "to": "C16orf70", "group": "default"}, {"from": "MBL2", "to": "KRT1", "group": "default"}, {"from": "IL24", "to": "NOTCH2", "group": "default"}, {"from": "IL24", "to": "CCR5", "group": "default"}, {"from": "F2", "to": "PLAT", "group": "default"}, {"from": "CCR5", "to": "PSMA5", "group": "default"}, {"from": "CCR5", "to": "AFP", "group": "default"}, {"from": "SERPINB8", "to": "FCF1", "group": "default"}, {"from": "IL1RN", "to": "FCF1", "group": "default"}, {"from": "PLAT", "to": "SERPINB2", "group": "default"}, {"from": "PLAT", "to": "FGL1", "group": "default"}, {"from": "PLAT", "to": "LAMA1", "group": "default"}, {"from": "FCF1", "to": "CALML3", "group": "default"}, {"from": "FCF1", "to": "SERPINB2", "group": "default"}, {"from": "FCF1", "to": "IGHG2", "group": "default"}, {"from": "FCF1", "to": "MYH14", "group": "default"}, {"from": "FCF1", "to": "RPL30", "group": "default"}, {"from": "FCF1", "to": "EPPK1", "group": "default"}, {"from": "THBS3", "to": "NDUFA3", "group": "default"}, {"from": "THBS3", "to": "FANCB", "group": "default"}, {"from": "CALML3", "to": "PARK2", "group": "default"}, {"from": "PSMA5", "to": "PARK2", "group": "default"}, {"from": "PSMA5", "to": "HEATR1", "group": "default"}, {"from": "PSMA5", "to": "PSMD1", "group": "default"}, {"from": "PSMA5", "to": "DARS", "group": "default"}, {"from": "NDUFA3", "to": "SLC18A1", "group": "default"}, {"from": "NDUFA3", "to": "DQX1", "group": "default"}, {"from": "FAM19A3", "to": "CRYZL1", "group": "default"}, {"from": "RSPRY1", "to": "TMPRSS11A", "group": "default"}, {"from": "RSPRY1", "to": "SLC18A1", "group": "default"}, {"from": "PCDHB15", "to": "SSR3", "group": "default"}, {"from": "PCDHB15", "to": "TBCK", "group": "default"}, {"from": "TSR3", "to": "FGL1", "group": "default"}, {"from": "TSR3", "to": "C7orf60", "group": "default"}, {"from": "C7orf60", "to": "REN", "group": "default"}, {"from": "SSR3", "to": "MYH14", "group": "default"}, {"from": "C16orf70", "to": "FBXO30", "group": "default"}, {"from": "DQX1", "to": "FBXO30", "group": "default"}, {"from": "LAMA1", "to": "AP4E1", "group": "default"}, {"from": "AP4E1", "to": "AP4S1", "group": "default"}, {"from": "AP4S1", "to": "AFP", "group": "default"}]}'>
{ "id": "ICAM1", "group": "protein", "label": "ICAM1" },
{ "id": "TNF", "group": "protein", "label": "TNF" },
{ "id": "SFRP2", "group": "protein", "label": "SFRP2" },
{ "id": "APC2", "group": "protein", "label": "APC2" },
{ "id": "IL10", "group": "protein", "label": "IL10" },
{ "id": "CUL2", "group": "protein", "label": "CUL2" },
{ "id": "SFRP1", "group": "protein", "label": "SFRP1" },
{ "id": "TNFSF15", "group": "protein", "label": "TNFSF15" },
{ "id": "ITGA4", "group": "protein", "label": "ITGA4" },
{ "id": "DEFA5", "group": "protein", "label": "DEFA5" },
{ "id": "MUC19", "group": "protein", "label": "MUC19" },
{ "id": "SLAMF8", "group": "protein", "label": "SLAMF8" },
{ "id": "APC", "group": "protein", "label": "APC" },
{ "id": "IL6", "group": "protein", "label": "IL6" },
{ "id": "INAVA", "group": "protein", "label": "INAVA" },
{ "id": "CARD9", "group": "protein", "label": "CARD9" },
{ "id": "ITGB8", "group": "protein", "label": "ITGB8" },
{ "id": "IL23R", "group": "protein", "label": "IL23R" },
{ "id": "NOD2", "group": "protein", "label": "NOD2" },
{ "id": "RASSF1", "group": "protein", "label": "RASSF1" },
{ "id": "SLC11A1", "group": "protein", "label": "SLC11A1" },
{ "id": "IL18RAP", "group": "protein", "label": "IL18RAP" },
{ "id": "TGFB1", "group": "protein", "label": "TGFB1" },
{ "id": "IRGM", "group": "protein", "label": "IRGM" },
{ "id": "PLCG2", "group": "protein", "label": "PLCG2" },
{ "id": "PTPN22", "group": "protein", "label": "PTPN22" },
{ "id": "PTGS2", "group": "protein", "label": "PTGS2" },
{ "id": "VNN1", "group": "protein", "label": "VNN1" },
{ "id": "ITGAL", "group": "protein", "label": "ITGAL" }]}'>
</drugst-one> </drugst-one>
......
...@@ -133,7 +133,7 @@ ...@@ -133,7 +133,7 @@
div.card.bar-large { div.card.bar-large {
margin: 5px; margin: 5px;
max-height: 600px; max-height: 800px;
} }
div.card-content.overflow { div.card-content.overflow {
......
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