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Commit a8528a9c authored by Julian Matschinske's avatar Julian Matschinske
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Merge branch 'enable-protein-selection-in-analysis-window' into 'master' 

Enable protein selection in analysis window

See merge request covid-19/frontend!37
parents c625ad7f c2b02a78
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with 132 additions and 30 deletions
src/app/analysis.service.ts
+ 4
− 0
View file @ a8528a9c
......@@ -39,6 +39,10 @@ export class AnalysisService {
}
}
resetSelection() {
this.selectedProteins = new Map<string, Protein>();
}
inSelection(protein: Protein): boolean {
return this.selectedProteins.has(protein.proteinAc);
}
......
src/app/components/analysis-window/analysis-window.component.ts
+ 85
− 5
View file @ a8528a9c
import {Component, ElementRef, EventEmitter, Input, OnChanges, OnInit, Output, SimpleChanges, ViewChild} from '@angular/core';
import {
Component,
ElementRef,
EventEmitter,
Input,
OnChanges,
OnInit,
Output,
SimpleChanges,
ViewChild
} from '@angular/core';
import {HttpClient} from '@angular/common/http';
import {environment} from '../../../environments/environment';
import {AnalysisService} from '../../analysis.service';
import {Task} from '../../interfaces';
import {Protein, Task} from '../../interfaces';
declare var vis: any;
......@@ -24,6 +34,7 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
private nodeData: { nodes: any, edges: any } = {nodes: null, edges: null};
private drugNodes = [];
private showDrugs = false;
private result: any;
constructor(private http: HttpClient, private analysis: AnalysisService) {
}
......@@ -41,8 +52,9 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
if (this.task && this.task.info.done) {
const result = await this.http.get<any>(`${environment.backend}result/?token=${this.token}`).toPromise();
this.result = result;
this.networkEl.nativeElement.innerHTML = '';
this.network = null;
this.network = null;
this.nodeData = {nodes: null, edges: null};
this.createNetwork(result);
}
......@@ -79,12 +91,80 @@ export class AnalysisWindowComponent implements OnInit, OnChanges {
};
this.network = new vis.Network(container, this.nodeData, options);
this.network.on('select', (properties) => {
const id: Array<string> = properties.nodes;
if (id.length > 0) {
if (id[0].startsWith('p_')) {
const protein = this.getProtein(id[0].substr(2));
if (properties.event.srcEvent.ctrlKey) {
if (this.inSelection(protein.proteinAc) === true) {
this.removeFromSelection(protein.proteinAc);
} else {
this.addToSelection(protein.proteinAc);
this.analysis.getCount();
}
}
}
}
});
this.network.on('select', () => {
// TODO
this.analysis.subscribe((protein, selected) => {
const nodeId = `p_${protein.proteinAc}`;
const node = this.nodeData.nodes.get(nodeId);
if (!node) {
return;
}
const pos = this.network.getPositions([nodeId]);
node.x = pos[nodeId].x;
node.y = pos[nodeId].y;
if (selected) {
node.color = '#c42eff';
this.nodeData.nodes.update(node);
} else {
node.color = '#e2b600';
this.nodeData.nodes.update(node);
}
});
}
inSelection(proteinAc: string): boolean {
if (!this.result.proteins || !proteinAc) {
return false;
}
const protein = this.getProtein(proteinAc);
if (!protein) {
return false;
}
return this.analysis.inSelection(protein);
}
addToSelection(proteinAc: string) {
if (!this.result.proteins || !proteinAc) {
return false;
}
const protein = this.getProtein(proteinAc);
if (!protein) {
return false;
}
this.analysis.addProtein(protein);
}
removeFromSelection(proteinAc: string) {
if (!this.result.proteins || !proteinAc) {
return false;
}
const protein = this.getProtein(proteinAc);
if (!protein) {
return false;
}
this.analysis.removeProtein(protein);
}
public getProtein(ac: string): Protein | undefined {
return this.result.proteins.find((p) => p.proteinAc === ac);
}
private mapProteinToNode(protein: any): any {
let color = '#e2b600';
if (this.analysis.inSelection(protein)) {
......
src/app/main-network.ts
+ 1
− 1
View file @ a8528a9c
......@@ -13,7 +13,7 @@ export class ProteinNetwork {
public async loadPositions(http: HttpClient, dataset: Array<[string, string]>) {
const nodePositions = await http.get(`assets/positions/${getDatasetFilename(dataset)}`).toPromise();
this.proteins.forEach((node) => {
const nodePosition = nodePositions[`pg_${node.proteinAc}`];
const nodePosition = nodePositions[`p_${node.proteinAc}`];
if (nodePosition) {
node.x = nodePosition.x;
node.y = nodePosition.y;
......
src/app/pages/explorer-page/explorer-page.component.html
+ 24
− 2
View file @ a8528a9c
......@@ -185,10 +185,26 @@
</header>
<div class="card-content">
<button class="button is-success" *ngIf="!inSelection(currentProteinAc)"
(click)="addToSelection(currentProteinAc)">Add to Analysis
(click)="addToSelection(currentProteinAc)">
<span>
<span class="icon">
<i class="fa fa-plus"></i>
</span>
<span>
Add to Analysis
</span>
</span>
</button>
<button class="button is-danger" *ngIf="inSelection(currentProteinAc)"
(click)="removeFromSelection(currentProteinAc)">Remove from Analysis
(click)="removeFromSelection(currentProteinAc)">
<span>
<span class="icon">
<i class="fa fa-minus"></i>
</span>
<span>
Remove from Analysis
</span>
</span>
</button>
<p></p>
<button (click)="showAnalysisDialog = true"
......@@ -247,6 +263,12 @@
</tr>
</tbody>
</table>
<footer class="card-footer">
<button [disabled]="analysis.getSelection().length < 1" (click)="analysis.resetSelection();"
class="card-footer-item button is-danger">
Reset
</button>
</footer>
</div>
</div>
......
src/app/pages/explorer-page/explorer-page.component.ts
+ 13
− 17
View file @ a8528a9c
......@@ -97,7 +97,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
});
this.analysis.subscribe((protein, selected) => {
const nodeId = `pg_${protein.proteinAc}`;
const nodeId = `p_${protein.proteinAc}`;
const node = this.nodeData.nodes.get(nodeId);
if (!node) {
return;
......@@ -106,15 +106,11 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
node.x = pos[nodeId].x;
node.y = pos[nodeId].y;
if (selected) {
if (node) {
node.color = '#c42eff';
this.nodeData.nodes.update(node);
}
node.color = '#48C774';
this.nodeData.nodes.update(node);
} else {
if (node) {
node.color = '#e2b600';
this.nodeData.nodes.update(node);
}
node.color = '#e2b600';
this.nodeData.nodes.update(node);
}
});
}
......@@ -165,7 +161,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
public async openSummary(protein: Protein, zoom: boolean) {
await this.router.navigate(['explorer'], {queryParams: {protein: protein.proteinAc}});
if (zoom) {
this.zoomToNode(`pg_${protein.proteinAc}`);
this.zoomToNode(`p_${protein.proteinAc}`);
}
}
......@@ -222,8 +218,8 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
this.network.on('select', (properties) => {
const id: Array<string> = properties.nodes;
if (id.length > 0) {
if (id[0].startsWith('pg_')) {
const protein = this.proteinData.getProtein(id[0].substr(3));
if (id[0].startsWith('p_')) {
const protein = this.proteinData.getProtein(id[0].substr(2));
this.openSummary(protein, false);
if (properties.event.srcEvent.ctrlKey) {
if (this.inSelection(protein.proteinAc) === true) {
......@@ -250,7 +246,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
}
if (this.currentProteinAc) {
this.zoomToNode(`pg_${this.currentProteinAc}`);
this.zoomToNode(`p_${this.currentProteinAc}`);
}
this.queryItems = [];
......@@ -315,7 +311,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
});
const filteredProteins = [];
for (const protein of this.proteinData.proteins) {
const nodeId = `pg_${protein.proteinAc}`;
const nodeId = `p_${protein.proteinAc}`;
const contains = connectedProteinAcs.has(protein.proteinAc);
const found = visibleIds.has(nodeId);
if (contains) {
......@@ -361,10 +357,10 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
private mapProteinToNode(protein: Protein): any {
let color = '#e2b600';
if (this.analysis.inSelection(protein)) {
color = '#c42eff';
color = '#48C774';
}
return {
id: `pg_${protein.proteinAc}`,
id: `p_${protein.proteinAc}`,
label: `${protein.proteinAc}`,
size: 10, font: '5px', color, shape: 'ellipse', shadow: false,
x: protein.x,
......@@ -384,7 +380,7 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
private mapEdge(edge: ProteinViralInteraction): any {
return {
from: `pg_${edge.proteinAc}`,
from: `p_${edge.proteinAc}`,
to: `eff_${edge.effectName}_${edge.virusName}_${edge.datasetName}`,
color: {color: '#afafaf', highlight: '#854141'},
};
......
src/assets/positions/network-KroganSARS-CoV2.json
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src/assets/positions/network-TUMHCoV.json
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src/assets/positions/network-TUMSARS-CoV2.json
+ 1
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