Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
P
plugin
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Iterations
Wiki
Requirements
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Package registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
This is an archived project. Repository and other project resources are read-only.
Show more breadcrumbs
Cosy-Bio
Drugst.One
plugin
Commits
c3aa94b7
Commit
c3aa94b7
authored
2 years ago
by
AndiMajore
Browse files
Options
Downloads
Patches
Plain Diff
removed test file
parent
cbde29ac
No related branches found
Branches containing commit
No related tags found
Tags containing commit
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
src/index_remote_test.html
+0
-146
0 additions, 146 deletions
src/index_remote_test.html
with
0 additions
and
146 deletions
src/index_remote_test.html
deleted
100644 → 0
+
0
−
146
View file @
cbde29ac
<!doctype html>
<html
lang=
"en"
>
<head>
<meta
charset=
"utf-8"
>
<title>
Network Expander
</title>
<base
href=
"/"
>
<script
src=
"https://cdn.drugst.one/latest/drugstone.js"
></script>
<link
rel=
"stylesheet"
href=
"https://cdn.drugst.one/latest/styles.css"
>
<meta
name=
"viewport"
content=
"width=device-width, initial-scale=1.0"
>
<!-- <script type="text/javascript" src="https://unpkg.com/vis-network/standalone/umd/vis-network.min.js"></script>-->
<!-- <link rel="stylesheet" type="text/css" href="./stylesheets/theme.css">-->
</head>
<body>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showOverview":'+this.checked+'}')
checked
/>
Show overview
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showQuery":'+this.checked+'}')
/>
Show query
<br>
<!-- <input type="checkbox" onclick=changeConfigStr('{"showSidebar":'+this.checked+'}') checked /> Show sidebar<br> -->
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showItemSelector":'+this.checked+'}')
checked
/>
Show ItemSelector
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showSimpleAnalysis":'+this.checked+'}')
/>
Show SimpleAnalysis
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showAdvAnalysis":'+this.checked+'}')
checked
/>
Show Advanced Analysis
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showTasks":'+this.checked+'}')
checked
/>
Show Tasks
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showSelection":'+this.checked+'}')
checked
/>
Show Selection
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showNetworkMenu":'+this.checked+'}')
checked
/>
Show Footer
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showLegend":'+this.checked+'}')
checked
/>
Show Legend
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showNetworkMenuButtonScreenshot":'+this.checked+'}')
checked
/>
Show Screenshot button
<br>
<input
type=
"checkbox"
onclick=
changeConfigStr('{"showNetworkMenuButtonExportGraphml":'+this.checked+'}')
checked
/>
Show Export As Graphml Button
<br>
<input
id=
"new_color"
type=
"text"
/>
<button
onclick=
changeColor(document.getElementById("new_color").value)
>
Set Color
</button>
<br>
<button
onclick=
changeConfigStr('{"legendPos":"left"}')
>
Legend to Left
</button>
<br>
<button
onclick=
changeConfigStr('{"legendPos":"right"}')
>
Legend to Right
</button>
<br>
<button
onclick=
changeConfigStr('{"interactions":"omnipath"}')
>
Get Omnipath Interactions
</button>
<br>
<button
onclick=
changeConfigStr('{"showSidebar":false}')
>
Hide sidebar
</button><br>
<button
onclick=
changeConfigStr('{"showSidebar":"left"}')
>
Mode sidebar to left
</button><br>
<button
onclick=
changeConfigStr('{"showSidebar":"right"}')
>
Move sidebr to right
</button><br>
<button
onclick=
changeConfigStr('{"showNetworkMenu":false}')
>
Hide networkMenu
</button><br>
<button
onclick=
changeConfigStr('{"showNetworkMenu":"left"}')
>
Mode networkMenu to left
</button><br>
<button
onclick=
changeConfigStr('{"showNetworkMenu":"right"}')
>
Move networkMenu to right
</button><br>
<button
onclick=
"initTaskEventListener()"
>
Init Task-Eventlistener
</button>
<br>
<input
id=
"taskID"
type=
"text"
/>
<button
onclick=
loadTaskID(document.getElementById("taskID").value)
class=
"button is-primary"
>
Load TaskID
</button>
<br>
<!--<input type="checkbox" onclick=changeConfigStr('{"showSimpleAnalysis":'+this.checked+'}') checked /> Show SimpleAnalysis<br>-->
<br>
<button
onclick=
"setNetwork('netexp1')"
>
Add nodes
</button>
<div
style=
"max-width: 80vw"
>
<drugst-one
id=
"netexp1"
pluginId=
"2"
config=
'{"physicsOn":true, "showLeftSidebar": true, "showSimpleAnalysis":true, "nodeGroups":{"patient":{"type":"patient","color":"black","font":{"color":"#ffffff"},"groupName":"Patient","shape":"image","image":"https://static.thenounproject.com/png/22780-200.png"},"condition":{"type":"condition","color":"black","font":{"color":"black"},"groupName":"Condition","shape":"text"},"important":{"type":"gene","color":"#ff881f","font":{"color":"#000000"},"groupName":"Important Gene","shape":"star"},"gene":{"type":"gene","color":"#4da300","font":{"color":"#ffffff"},"groupName":"Gene","shape":"circle"},"foundDrug":{"type":"drug","color":{"border":"#F12590","background":"#F12590"},"font":{"color":"#f0f0f0"},"groupName":"Drug","shape":"diamond"}},"edgeGroups":{"genotype":{"color":"black","groupName":"Relevant Gene"},"has-condition":{"color":"#000000","groupName":"Has Condition","dashes":[2,2]},"default":{"color":"#000000","groupName":"default edge"},"ggi":{"color":"#000000","groupName":"Interaction","dashes":[3,2]}},"identifier":"symbol","title":"Breast cancer example network","nodeShadow":true,"edgeShadow":false,"autofillEdges":false,"showLegend":true}'
network=
'{"nodes":[{"id":"patient-1","group":"patient","x":592,"y":446},{"id":"patient-2","group":"patient","x":235,"y":87},{"id":"patient-3","group":"patient","x":105,"y":369},{"id":"ATM","label":"ATM","group":"gene","x":289,"y":242},{"id":"BARD1","label":"BARD1","group":"gene","x":44,"y":250},{"id":"BRCA1","label":"BRCA1","group":"gene","x":466,"y":576},{"id":"BRCA2","label":"BRCA2","group":"gene","x":507,"y":285},{"id":"BRIP1","label":"BRIP1","group":"gene","x":54,"y":474},{"id":"CHEK2","label":"CHEK2","group":"gene","x":216,"y":590},{"id":"CDH1","label":"CDH1","group":"gene","x":320,"y":-57},{"id":"NF1","label":"NF1","group":"gene","x":481,"y":111},{"id":"NBN","label":"NBN","group":"gene","x":-57,"y":314},{"id":"PALB2","label":"PALB2","group":"gene","x":450,"y":190},{"id":"PTEN","label":"PTEN","group":"important","x":305,"y":494},{"id":"RAD51C","label":"RAD51C","group":"gene","x":182,"y":-90},{"id":"RAD51D","label":"RAD51D","group":"gene","x":368,"y":73},{"id":"STK11","label":"STK11","group":"gene","x":686,"y":330},{"id":"TP53","label":"TP53","group":"important","x":333,"y":316},{"id":"subtype-1","label":"Subtype 1","group":"condition","x":556,"y":171},{"id":"subtype-2","label":"Subtype 2","group":"condition","x":-87,"y":221}],"edges":[{"from":"BRCA1","to":"BRCA2","group":"ggi"},{"from":"ATM","to":"BARD1","group":"ggi"},{"from":"BRCA1","to":"CHEK2","group":"ggi"},{"from":"RAD51C","to":"RAD51D","group":"ggi"},{"from":"STK11","to":"TP53","group":"ggi"},{"from":"TP53","to":"PALB2","group":"ggi"},{"from":"TP53","to":"RAD51D","group":"ggi"},{"from":"TP53","to":"NF1","group":"ggi"},{"from":"TP53","to":"BRCA1","group":"ggi"},{"from":"TP53","to":"BRCA2","group":"ggi"},{"from":"PTEN","to":"BRCA1","group":"ggi"},{"from":"PTEN","to":"BRCA2","group":"ggi"},{"from":"TP53","to":"PTEN","group":"ggi"},{"from":"ATM","to":"PTEN","group":"ggi"},{"from":"CDH1","to":"RAD51D","group":"ggi"},{"from":"CDH1","to":"PALB2","group":"ggi"},{"from":"NBN","to":"BRIP1","group":"ggi"},{"from":"BRIP1","to":"PTEN","group":"ggi"},{"from":"patient-1","to":"BRCA1","group":"genotype"},{"from":"patient-1","to":"TP53","group":"genotype"},{"from":"patient-1","to":"BRCA2","group":"genotype"},{"from":"patient-1","to":"PTEN","group":"genotype"},{"from":"patient-2","to":"TP53","group":"genotype"},{"from":"patient-2","to":"NF1","group":"genotype"},{"from":"patient-2","to":"BARD1","group":"genotype"},{"from":"patient-3","to":"TP53","group":"genotype"},{"from":"patient-3","to":"PTEN","group":"genotype"},{"from":"patient-3","to":"NBN","group":"genotype"},{"from":"patient-1","to":"subtype-1","group":"has-condition"},{"from":"patient-2","to":"subtype-1","group":"has-condition"},{"from":"patient-3","to":"subtype-2","group":"has-condition"}]}'
>
</drugst-one>
</div>
<!--<div >-->
<!-- <network-expander id="netexp2"-->
<!-- pluginId="2"-->
<!-- config='{}' network='{"nodes":[], "edges":[]}'></network-expander>-->
<!--</div>-->
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<script>
function
changeConfig
()
{
const
netexp
=
document
.
getElementById
(
'
netexp1
'
);
netexp
.
setAttribute
(
'
config
'
,
'
{"showLeftSidebar": false}
'
);
}
function
changeConfigStr
(
config
)
{
console
.
log
(
config
);
const
netexp
=
document
.
getElementById
(
'
netexp1
'
);
netexp
.
setAttribute
(
'
config
'
,
config
);
}
function
initTaskEventListener
(){
document
.
getElementsByTagName
(
"
network-expander
"
)[
0
].
addEventListener
(
"
taskEvent
"
,(
event
)
=>
{
console
.
log
(
event
.
detail
)})
}
function
setNetwork
(
nw
)
{
const
netexp
=
document
.
getElementById
(
nw
);
netexp
.
setAttribute
(
'
network
'
,
JSON
.
stringify
({
nodes
:
[
{
name
:
"
ENSG00000171862
"
,
id
:
"
ENSG00000171862
"
,
group
:
"
genes
"
}
],
edges
:
[
]
}));
}
function
changeColor
(
hexacode
)
{
console
.
log
(
hexacode
)
const
elements_background_color
=
document
.
getElementsByClassName
(
'
is-primary
'
);
for
(
var
i
=
0
;
i
<
elements_background_color
.
length
;
i
++
){
elements_background_color
[
i
].
setAttribute
(
'
style
'
,
`background-color:
${
hexacode
}
!important; color: white !important; border-color:
${
hexacode
}
!important`
);
}
const
elements_text
=
document
.
getElementsByClassName
(
'
text-primary
'
);
for
(
var
i
=
0
;
i
<
elements_text
.
length
;
i
++
){
elements_text
[
i
].
setAttribute
(
'
style
'
,
`color:
${
hexacode
}
!important`
);
}
}
function
loadTaskID
(
token
){
console
.
log
(
"
Trying to load
"
+
token
)
const
netexp
=
document
.
getElementById
(
'
netexp1
'
);
netexp
.
setAttribute
(
'
task-id
'
,
token
);
}
</script>
</body>
</html>
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment