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  • wsclean2.11
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DP3.log

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    DP3.log 19.66 KiB 
    RRZ: re-using existing module setup (RRZ_SW_INIT present)
module: unloaded env/system-gcc
module: loaded env/2019Q4-cuda-gcc-openmpi
Module for pkgsrc-devel 2019Q4 loaded.
module: loaded pythonversion/3
TODO: Ensure conistent use of one openblas variant (the one cblas and numpy use)
CASAcore already installed.
Python-CASAcore already installed.
Dysco already installed.
AOFlagger already installed.
IDG already installed.
Installing DP3...
Using existing sources.
-- The C compiler identification is GNU 8.3.0
-- The CXX compiler identification is GNU 8.3.0
-- Check for working C compiler: /sw/compiler/gcc-8.3.0/bin/gcc
-- Check for working C compiler: /sw/compiler/gcc-8.3.0/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /sw/compiler/gcc-8.3.0/bin/g++
-- Check for working CXX compiler: /sw/compiler/gcc-8.3.0/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- HDF5: Using hdf5 compiler wrapper to determine CXX configuration
-- Found HDF5: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libhdf5_cpp.so;/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libhdf5.so;/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.5") found components:  C CXX 
-- Found CFITSIO: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libcfitsio.so  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: BLAS_LIBRARIES-PLACEHOLDER-FOR-EMPTY-LIBRARIES  
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found HDF5: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libhdf5_cpp.so;/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libhdf5.so;/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.5")  
-- Found the following Casacore components: 
--   ms: /dev/shm/thor-lofar/casacore/lib/libcasa_ms.so
--   fits: /dev/shm/thor-lofar/casacore/lib/libcasa_fits.so
--   scimath: /dev/shm/thor-lofar/casacore/lib/libcasa_scimath.so
--   measures: /dev/shm/thor-lofar/casacore/lib/libcasa_measures.so
--   scimath_f: /dev/shm/thor-lofar/casacore/lib/libcasa_scimath_f.so
--   tables: /dev/shm/thor-lofar/casacore/lib/libcasa_tables.so
--   casa: /dev/shm/thor-lofar/casacore/lib/libcasa_casa.so
CMake Warning (dev) at /dev/shm/thor-lofar/idg/share/idgapi/cmake/idgapi-config.cmake:16 (set):
  implicitly converting 'LOCATION' to 'STRING' type.
Call Stack (most recent call first):
  CMakeLists.txt:33 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Image domain gridder API libraries found.
-- Found Python3: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/bin/python3.6 (found version "3.6.9") found components: Interpreter Development 
-- Found Boost: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include (found version "1.71.0") found components: date_time filesystem python36 program_options system unit_test_framework 
-- LOFAR beam library found.
-- Found LibXml2: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libxml2.so (found version "2.9.10") 
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") 
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") 
-- Found PkgConfig: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/bin/pkg-config (found version "1.6.0") 
-- Checking for module 'gtkmm-3.0>=3.0.0'
    --   Found gtkmm-3.0, version 3.24.1
-- Checking for module 'sigc++-2.0'
--   Found sigc++-2.0, version 2.10.2
-- Found Armadillo: /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/libarmadillo.so (found version "9.400.3") 
-- Found PythonInterp: /sw/link/python3/bin/python (found version "3.6.9") 
-- Build directory for Python extensions:        /dev/shm/thor-lofar/DP3/build/lib/python3.6/site-packages
-- Installation directory for Python extensions: /dev/shm/thor-lofar/DP3/lib/python3.6/site-packages
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_COMPILER
    CMAKE_Fortran_FLAGS


-- Build files have been written to: /dev/shm/thor-lofar/DP3/build
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In file included from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/detail/is_xxx.hpp:8,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/detail/is_auto_ptr.hpp:9,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/detail/copy_ctor_mutates_rhs.hpp:8,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/detail/value_arg.hpp:7,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/object/forward.hpp:10,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/object/pointer_holder.hpp:16,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/to_python_indirect.hpp:10,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/converter/arg_to_python.hpp:10,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/call.hpp:15,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/object_core.hpp:14,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/args.hpp:22,
                 from /sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python.hpp:11,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/PythonStep.h:37,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/DPStepBase.h:25,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/PythonDPPP.cc:22:
/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/detail/is_auto_ptr.hpp:17:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
 BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1)
                                        ^~~~~~~~
/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/detail/is_xxx.hpp:20:4: note: in definition of macro ‘BOOST_DETAIL_IS_XXX_DEF’
    qualified_name< BOOST_PP_ENUM_PARAMS_Z(1, nargs, T) >        \
    ^~~~~~~~~~~~~~
/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/boost/python/detail/is_auto_ptr.hpp:17:1: note: in expansion of macro ‘BOOST_PYTHON_IS_XXX_DEF’
 BOOST_PYTHON_IS_XXX_DEF(auto_ptr, std::auto_ptr, 1)
 ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/software/compiler/gcc-8.3.0/include/c++/8.3.0/memory:80,
                 from /dev/shm/thor-lofar/casacore/include/casacore/casa/Utilities/CountedPtr.h:32,
                 from /dev/shm/thor-lofar/casacore/include/casacore/casa/Arrays/ArrayBase.h:35,
                 from /dev/shm/thor-lofar/casacore/include/casacore/casa/Arrays/Array.h:35,
                 from /dev/shm/thor-lofar/casacore/include/casacore/casa/Arrays/Vector.h:33,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/../DPPP/DPBuffer.h:30,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/../DPPP/DPStep.h:30,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/../DPPP/DPInput.h:30,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/PythonStep.h:30,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/DPStepBase.h:25,
                 from /dev/shm/thor-lofar/DP3/src/PythonDPPP/PythonDPPP.cc:22:
/home/software/compiler/gcc-8.3.0/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
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[  1%] Built target AOFlaggerStep_OBJ
[ 10%] Built target DDECal_OBJ
    [ 15%] Built target Blob
[ 28%] Built target Common
[ 45%] Built target ParmDB
[ 46%] Built target makesourcedb
[ 48%] Built target showsourcedb
[ 92%] Built target DPPP_OBJ
[ 94%] Built target dppp_testdyndppp
[ 96%] Built target IDGPredict
[ 98%] Built target DPPP
[100%] Built target _pythondppp
Install the project...
-- Install configuration: ""
-- Installing: /dev/shm/thor-lofar/DP3/bin/makesourcedb
-- Installing: /dev/shm/thor-lofar/DP3/bin/showsourcedb
-- Installing: /dev/shm/thor-lofar/DP3/bin/DPPP
-- Up-to-date: /dev/shm/thor-lofar/DP3/share/rfistrategies/LOFAR-LBA-default.rfis
-- Up-to-date: /dev/shm/thor-lofar/DP3/share/rfistrategies/LOFAR-HBA-default.rfis
-- Installing: /dev/shm/thor-lofar/DP3/lib/python3.6/site-packages/lofar/dppp/__init__.py
-- Installing: /dev/shm/thor-lofar/DP3/lib/python3.6/site-packages/lofar/pythondppp/_pythondppp.so
-- Installing: /dev/shm/thor-lofar/DP3/lib/python3.6/site-packages/lofar/pythondppp/__init__.py
Installed DP3.
WSClean already installed.
Installing pyBDSF.
Using existing sources.
look at /home/rznv039/lofar-work/pyBDSF-env.sh