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build.log

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    build.log 6.72 KiB 
    RRZ: re-using existing module setup (RRZ_SW_INIT present)
module: unloaded env/2019Q4-cuda-gcc-openmpi
Module for pkgsrc-devel 2019Q4 unloaded.
module: loaded env/2019Q4-cuda-gcc-openmpi
Module for pkgsrc-devel 2019Q4 loaded.
module: loaded pythonversion/3
TODO: Ensure conistent use of one openblas variant (the one cblas and numpy use)
CASAcore already installed.
Python-CASAcore already installed.
Dysco already installed.
AOFlagger already installed.
IDG already installed.
DP3 already installed.
WSClean already installed.
Installing pyBDSF.
Using existing sources.
running install
running bdist_egg
running egg_info
running build_src
build_src
building extension "bdsf._pytesselate" sources
f2py options: ['']
  adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf/fortranobject.c' to sources.
  adding 'build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf' to include_dirs.
building extension "bdsf._cbdsm" sources
building extension "bdsf.nat.natgridmodule" sources
build_src: building npy-pkg config files
writing bdsf.egg-info/PKG-INFO
writing dependency_links to bdsf.egg-info/dependency_links.txt
writing requirements to bdsf.egg-info/requires.txt
writing top-level names to bdsf.egg-info/top_level.txt
writing manifest file 'bdsf.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
running build_ext
running mbuild
Building libminpack
Building libport3
dg7qts.f:331:22:

dg7qts.f:329:72:

       DO 110 I = 2, P
                                                                        2
dg7qts.f:331:22:

          T = W(J) - W(I)
                      1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
dg7qts.f:368:22:

dg7qts.f:366:72:

       DO 160 I = 2, P
                                                                        2
dg7qts.f:368:22:

          T = W(J) + W(I)
                      1
Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2)
customize UnixCCompiler
customize UnixCCompiler using BuildExt
customize UnixCCompiler
customize UnixCCompiler using BuildExt
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /home/software/compiler/gcc-8.3.0/bin/gfortran
customize Gnu95FCompiler
    customize Gnu95FCompiler using BuildExt
building 'bdsf._pytesselate' extension
compiling C sources
C compiler: /sw/compiler/gcc-8.3.0/bin/gcc -DNDEBUG -march=ivybridge -O2 -fno-math-errno -ftree-vectorize -march=ivybridge -O2 -fno-math-errno -ftree-vectorize -I/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/include -I/sw/compiler/gcc-8.3.0/include -I/sw/compiler/cuda-10.2.89/include -I/usr/include -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/ncurses -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/db4 -march=native -O3 -fno-math-errno -ftree-vectorize -fPIC

compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/python3.6/site-packages/numpy/core/include -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/python3.6 -c'
compiling Fortran sources
Fortran f77 compiler: /home/software/compiler/gcc-8.3.0/bin/gfortran -Wall -ffixed-form -fno-second-underscore -fPIC -O3
Fortran f90 compiler: /home/software/compiler/gcc-8.3.0/bin/gfortran -Wall -fno-second-underscore -fPIC -O3
Fortran fix compiler: /home/software/compiler/gcc-8.3.0/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -fPIC -O3
compile options: '-Ibuild/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib/python3.6/site-packages/numpy/core/include -I/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/include/python3.6 -c'
gfortran:f77: src/fortran/pytess_simple.f
gfortran:f77: src/fortran/pytess_roundness.f
src/fortran/pytess_roundness.f:30:24:

          roundfacold(i)=roundfac(i)
                        1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
/home/software/compiler/gcc-8.3.0/bin/gfortran -Wall -shared  -Wall -shared  -shared -L/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib -Wl,-R/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib -L/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib/openmpi -Wl,-R/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib/openmpi -L/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib -Wl,-R/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib -L/sw/compiler/gcc-8.3.0/lib64 -Wl,-R/sw/compiler/gcc-8.3.0/lib64 -L/sw/compiler/gcc-8.3.0/lib -Wl,-R/sw/compiler/gcc-8.3.0/lib -L/sw/compiler/cuda-10.2.89/lib64 -Wl,-R/sw/compiler/cuda-10.2.89/lib64 -lgsl -lcblas -lopenblas_openmp -Wl,--as-needed build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf/_pytesselatemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf/fortranobject.o build/temp.linux-x86_64-3.6/src/fortran/pytess_simple.o build/temp.linux-x86_64-3.6/src/fortran/pytess_roundness.o -L/sw/compiler/gcc-8.3.0/lib64/../lib64 -L/sw/compiler/gcc-8.3.0/lib64/../lib64 -L/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib -lpython3.6 -lgfortran -o build/lib.linux-x86_64-3.6/bdsf/_pytesselate.so
gfortran: error: : No such file or directory
gfortran: error: : No such file or directory
error: Command "/home/software/compiler/gcc-8.3.0/bin/gfortran -Wall -shared  -Wall -shared  -shared -L/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib -Wl,-R/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib -L/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib/openmpi -Wl,-R/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib/openmpi -L/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib -Wl,-R/sw/env/cuda-10.2.89_gcc-8.3.0/openmpi/4.0.2/lib -L/sw/compiler/gcc-8.3.0/lib64 -Wl,-R/sw/compiler/gcc-8.3.0/lib64 -L/sw/compiler/gcc-8.3.0/lib -Wl,-R/sw/compiler/gcc-8.3.0/lib -L/sw/compiler/cuda-10.2.89/lib64 -Wl,-R/sw/compiler/cuda-10.2.89/lib64 -lgsl -lcblas -lopenblas_openmp -Wl,--as-needed build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf/_pytesselatemodule.o build/temp.linux-x86_64-3.6/build/src.linux-x86_64-3.6/build/src.linux-x86_64-3.6/bdsf/fortranobject.o build/temp.linux-x86_64-3.6/src/fortran/pytess_simple.o build/temp.linux-x86_64-3.6/src/fortran/pytess_roundness.o -L/sw/compiler/gcc-8.3.0/lib64/../lib64 -L/sw/compiler/gcc-8.3.0/lib64/../lib64 -L/sw/env/cuda-10.2.89_gcc-8.3.0_openmpi-4.0.2/pkgsrc/2019Q4/lib -lpython3.6 -lgfortran -o build/lib.linux-x86_64-3.6/bdsf/_pytesselate.so" failed with exit status 1