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Commit c50dc7f8 authored by Gröne, Tjark Leon Raphael's avatar Gröne, Tjark Leon Raphael
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Update file maxwell_integrate_to_h5.py

parent f6511130
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...@@ -138,13 +138,17 @@ def integrate_ims_in_dir(path_im, path_int, dtype_im=".tif", dtype_int=".dat"): ...@@ -138,13 +138,17 @@ def integrate_ims_in_dir(path_im, path_int, dtype_im=".tif", dtype_int=".dat"):
subdir_fnames = [fname for fname in fnames_ims if os.path.dirname(fname) == subdir] subdir_fnames = [fname for fname in fnames_ims if os.path.dirname(fname) == subdir]
subdir_fnames_metadata = [fname for fname in fnames_metadata if os.path.dirname(fname) == subdir]
if not subdir_fnames:
print(f"No images found in subdirectory: {subdir}")
continue
subdir_path_int = path_int_list[fnames_ims.index(subdir_fnames[0])] subdir_path_int = path_int_list[fnames_ims.index(subdir_fnames[0])]
if not os.path.isdir(subdir_path_int): if not os.path.isdir(subdir_path_int):
os.mkdir(subdir_path_int) os.mkdir(subdir_path_int)
filtered_fnames = [fname_im for fname_im in subdir_fnames if "metadata" not in fname_im] filtered_fnames = [fname_im for fname_im in subdir_fnames if "metadata" not in fname_im]
filetered_metadata = [fname_im for fname_im in subdir_fnames if "metadata" in fname_im] filetered_metadata = [fname_im for fname_im in subdir_fnames_metadata if "metadata" in fname_im]
if filtered_fnames: if filtered_fnames:
# Use map_async to apply the integration_thread function to all filtered filenames # Use map_async to apply the integration_thread function to all filtered filenames
......
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