Merge branch 'main' of https://gitlab.rrz.uni-hamburg.de/bay2046/cami

cami_src/experiment2_run.py

+#!/usr/bin/env python3
+import pwd
+import sys
+from os import chdir
+import subprocess
+
+
+chdir((sys.argv[0].rsplit('/', 1))[0])
+networkfile = "../data/input/networks/biogrid_all_4.4.217.tsv"
+for seedfile in "../data/input/seeds/ex1_seeds/adhd.txt ../data/input/seeds/ex1_seeds/alcl.txt ../data/input/seeds/ex1_seeds/alzheimer.txt ../data/input/seeds/ex1_seeds/aplastic_anemia-inherited.txt ../data/input/seeds/ex1_seeds/asd_autism.txt ../data/input/seeds/ex1_seeds/asthma.txt ../data/input/seeds/ex1_seeds/cerebellar\ ataxia.txt ../data/input/seeds/ex1_seeds/cystic_fibrosis.txt ../data/input/seeds/ex1_seeds/diabetes_mellitus.txt ../data/input/seeds/ex1_seeds/example_seeds.txt ../data/input/seeds/ex1_seeds/heart_failure.txt ../data/input/seeds/ex1_seeds/heart_valve_disorder.txt ../data/input/seeds/ex1_seeds/hemophilia.txt ../data/input/seeds/ex1_seeds/hereditary_breast_cancer.txt ../data/input/seeds/ex1_seeds/joubert_syndrome.txt ../data/input/seeds/ex1_seeds/name.txt ../data/input/seeds/ex1_seeds/nsclc.txt ../data/input/seeds/ex1_seeds/obesity_disorder.txt ../data/input/seeds/ex1_seeds/ovarian_cancer.txt ../data/input/seeds/ex1_seeds/parkinson.txt ../data/input/seeds/ex1_seeds/sickle_cell_anemia.txt ../data/input/seeds/ex1_seeds/visual_epilepsy.txt".split(' '):
+    identifier = seedfile.rsplit('.',1)[0].rsplit('/',1)[1]
+    identifier = f'{identifier}_biogrid_all'
+    command = f'./cami.py -n {networkfile} -s {seedfile} -id {identifier} -img -p --f;'
+    subprocess.call(command, shell=True)
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