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Chow Castro, Marcos
cami
Commits
db5a5655
Commit
db5a5655
authored
2 years ago
by
Mia Le
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Merge branch 'main' of
https://gitlab.rrz.uni-hamburg.de/bay2046/cami
parents
6599dd6e
0acf7f78
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2 changed files
cami_src/cami_suite.py
+6
-1
6 additions, 1 deletion
cami_src/cami_suite.py
data/input/seeds/ex1_seeds/cerebellar_ataxia.txt
+165
-0
165 additions, 0 deletions
data/input/seeds/ex1_seeds/cerebellar_ataxia.txt
with
171 additions
and
1 deletion
cami_src/cami_suite.py
+
6
−
1
View file @
db5a5655
...
...
@@ -202,7 +202,12 @@ class cami():
ref_id
=
'
entrez
'
)
if
validation_results
[
'
status
'
]
==
'
ok
'
:
biodigest
.
single_validation
.
save_results
(
validation_results
,
f
'
{
result_set
}
_
{
self
.
uid
}
'
,
self
.
output_dir
)
biodigest
.
evaluation
.
d_utils
.
plotting_utils
.
create_plots
(
results
=
validation_results
,
mode
=
'
set-set
'
,
tar
=
set
(
self
.
result_gene_sets
[
result_set
]),
tar_id
=
'
entrez
'
,
out_dir
=
self
.
output_dir
,
prefix
=
f
'
{
result_set
}
_
{
self
.
uid
}
'
)
def
run_threaded_tool
(
self
,
tool
,
pred_sets
):
"""
run a tool in one thread and save the results into a dictionary pred_sets
...
...
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data/input/seeds/ex1_seeds/cerebellar_ataxia.txt
0 → 100644
+
165
−
0
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db5a5655
EntrezID
506
403
478
492
57231
23646
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23322
23345
23203
23247
23261
23152
767
773
9640
23116
23064
23090
9711
9731
9786
9474
9570
9150
8913
4867
4758
4547
57545
4287
57410
57465
4311
10531
10533
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10528
10479
10464
10273
153241
3748
3746
3708
407973
8481
28982
7957
64374
54903
54982
54974
54806
54840
7436
378884
7515
339453
7274
7222
7248
124997
3309
3312
3475
10939
3162
10715
374654
84942
84823
2895
94008
2923
2911
2672
60481
2420
25814
25894
11284
22
6548
26123
343641
6712
6315
6314
6311
6310
79867
79876
79848
65250
55775
79600
65062
2196
79581
79583
2259
2296
338435
2395
2332
80210
55280
80184
255928
55129
55187
6785
84991
6908
1728
1786
100359393
1822
1593
1600
85502
1106
1167
1200
85300
200403
51741
51763
51761
440193
51684
165918
51524
51567
200894
1938
26278
51259
5274
342371
317662
5034
5147
5190
5173
27072
27077
146057
9851
724066
56978
56997
146227
103753527
91147
56623
56652
100188768
5521
5582
95681
5631
5621
\ No newline at end of file
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