removal of ensg version string in id

67c53227 · AndiMajore · 8ee734c4 · 8ee734c4 · 67c53227
Commit 67c53227 authored 3 years ago by AndiMajore
--- a/drugstone-test.html
+++ b/drugstone-test.html
-<html lang="en">
-  <head>
-    <link rel="stylesheet" type="text/css" href="src/stylesheets/theme.css">
-    <script src="https://cdn.jsdelivr.net/gh/AndiMajore/drugstone-releases@0.8.1-rc1/remote/drugsTone.js"></script>
-    <link rel="stylesheet" href="https://cdn.jsdelivr.net/gh/AndiMajore/drugstone-releases@0.8.1-rc1/remote/styles.css">
-<!--    <link rel="stylesheet" type="text/css"  href="./drugsTone-build/styles.css">-->
-  </head>
-  <body>
-    <div style="height: 700px; width: 1300px;">
-      <network-expander
-        id='drugstOne'
-        config='{"nodeGroups":{"patient":{"type":"patient","color":"#000000","font":{"color":"#f0f0f0"},"groupName":"Patient","shape":"image","image":"https://static.thenounproject.com/png/22780-200.png","shadow":true},"condition":{"type":"condition","color":"#000000","font":{"color":"#f0f0f0"},"groupName":"Condition","shape":"text","shadow":false},"important":{"type":"gene","color":"#ff881f","font":{"color":"#f0f0f0"},"groupName":"Important Gene","shape":"star","shadow":true},"gene":{"type":"gene","color":"#4da300","font":{"color":"#f0f0f0"},"groupName":"Gene","shape":"circle","shadow":true}},"edgeGroups":{"genotype":{"color":"white","groupName":"Relevant Gene","shadow":false},"has-condition":{"color":"white","groupName":"Has Condition","dashes":[2,2],"shadow":false},"ggi":{"color":"#ffffff","groupName":"Interaction","dashes":[3,2],"shadow":false}},"identifier":"symbol","title":"Breast cancer example network","nodeShadow":false,"edgeShadow":false,"showLegend":true}'
-        network='{"nodes":[{"id":"patient-1","group":"patient","x":592,"y":446},{"id":"patient-2","group":"patient","x":235,"y":87},{"id":"patient-3","group":"patient","x":105,"y":369},{"id":"ATM","label":"ATM","group":"gene","x":289,"y":242},{"id":"BARD1","label":"BARD1","group":"gene","x":44,"y":250},{"id":"BRCA1","label":"BRCA1","group":"gene","x":466,"y":576},{"id":"BRCA2","label":"BRCA2","group":"gene","x":507,"y":285},{"id":"BRIP1","label":"BRIP1","group":"gene","x":54,"y":474},{"id":"CHEK2","label":"CHEK2","group":"gene","x":216,"y":590},{"id":"CDH1","label":"CDH1","group":"gene","x":320,"y":-57},{"id":"NF1","label":"NF1","group":"gene","x":481,"y":111},{"id":"NBN","label":"NBN","group":"gene","x":-57,"y":314},{"id":"PALB2","label":"PALB2","group":"gene","x":450,"y":190},{"id":"PTEN","label":"PTEN","group":"important","x":305,"y":494},{"id":"RAD51C","label":"RAD51C","group":"gene","x":182,"y":-90},{"id":"RAD51D","label":"RAD51D","group":"gene","x":368,"y":73},{"id":"STK11","label":"STK11","group":"gene","x":686,"y":330},{"id":"TP53","label":"TP53","group":"important","x":333,"y":316},{"id":"subtype-1","label":"Subtype 1","group":"condition","x":556,"y":171},{"id":"subtype-2","label":"Subtype 2","group":"condition","x":-87,"y":221}],"edges":[{"from":"BRCA1","to":"BRCA2","group":"ggi"},{"from":"ATM","to":"BARD1","group":"ggi"},{"from":"BRCA1","to":"CHEK2","group":"ggi"},{"from":"RAD51C","to":"RAD51D","group":"ggi"},{"from":"STK11","to":"TP53","group":"ggi"},{"from":"TP53","to":"PALB2","group":"ggi"},{"from":"TP53","to":"RAD51D","group":"ggi"},{"from":"TP53","to":"NF1","group":"ggi"},{"from":"TP53","to":"BRCA1","group":"ggi"},{"from":"TP53","to":"BRCA2","group":"ggi"},{"from":"PTEN","to":"BRCA1","group":"ggi"},{"from":"PTEN","to":"BRCA2","group":"ggi"},{"from":"TP53","to":"PTEN","group":"ggi"},{"from":"ATM","to":"PTEN","group":"ggi"},{"from":"CDH1","to":"RAD51D","group":"ggi"},{"from":"CDH1","to":"PALB2","group":"ggi"},{"from":"NBN","to":"BRIP1","group":"ggi"},{"from":"BRIP1","to":"PTEN","group":"ggi"},{"from":"patient-1","to":"BRCA1","group":"genotype"},{"from":"patient-1","to":"TP53","group":"genotype"},{"from":"patient-1","to":"BRCA2","group":"genotype"},{"from":"patient-1","to":"PTEN","group":"genotype"},{"from":"patient-2","to":"TP53","group":"genotype"},{"from":"patient-2","to":"NF1","group":"genotype"},{"from":"patient-2","to":"BARD1","group":"genotype"},{"from":"patient-3","to":"TP53","group":"genotype"},{"from":"patient-3","to":"PTEN","group":"genotype"},{"from":"patient-3","to":"NBN","group":"genotype"},{"from":"patient-1","to":"subtype-1","group":"has-condition"},{"from":"patient-2","to":"subtype-1","group":"has-condition"},{"from":"patient-3","to":"subtype-2","group":"has-condition"}]}'
-        task-id='EkxzkoNW7KjWc7Kq9kLQClfnCy5GI1ht'
-      >
-      </network-expander>
-      <script type="text/javascript">
-        document.getElementById("drugstOne").addEventListener("taskEvent",(event)=>{console.log(event.detail)})
-      </script>
-    </div>
-</body>
-</html>
--- a/src/app/pages/explorer-page/explorer-page.component.ts
+++ b/src/app/pages/explorer-page/explorer-page.component.ts
@@ -106,6 +106,17 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
    if (typeof network === 'undefined') {
      return;
    }
+    if (this.myConfig.identifier === 'ensg') {
+      // @ts-ignore
+      network.nodes.forEach(node => {
+        node.id = this.removeEnsemblVersion(node.id);
+      });
+      // @ts-ignore
+      network.edges.forEach(edge => {
+        edge.from = this.removeEnsemblVersion(edge.from);
+        edge.to = this.removeEnsemblVersion(edge.to);
+      });
+    }
    this.networkJSON = network;
    this.createNetwork();
  }
@@ -361,6 +372,10 @@ export class ExplorerPageComponent implements OnInit, AfterViewInit {
    this.showDetails = false;
  }

+  removeEnsemblVersion(versionId: string):string{
+    return versionId.startsWith('ENSG') ? versionId.split('.')[0] : versionId;
+  }
+
  public async createNetwork() {
    this.analysis.resetSelection();
    this.selectedWrapper = null;