230504: update of citation

DESCRIPTION

@@ -42,7 +42,7 @@ Suggests: knitr, testthat, usethis, rmarkdown
 VignetteBuilder: knitr
 SystemRequirements: Tested with at least 4 GB RAM.
 NeedsCompilation: no
-Packaged: 2023-05-03 09:11:34 UTC; helge
+Packaged: 2023-05-04 08:24:48 UTC; helge
 Author: Helge Jentsch [aut, cre],
   Maria Bobrowski [aut],
   Johannes Weidinger [aut],

NAMESPACE

@@ -35,4 +35,5 @@ importFrom(utils,sessionInfo)
 importFrom(utils,setTxtProgressBar)
 importFrom(utils,txtProgressBar)
 importFrom(utils,unzip)
+importFrom(utils,write.table)
 importFrom(utils,zip)

R/Chelsa_new_download_functions.R

@@ -19,10 +19,10 @@
 #'@return CHELSA climate datasets for the period of 1979 - 2013
 #'
 #'@note Please note that the downloaded data for temperature and the therefore also the first eleven bioclim-variables are processed to °C with one significant decimal without offset and factor. Processing and conversion to other file-formats on a global dataset may take some time.
-#'@note Citations not yet updated.Please check Chelsa Website for current citation!
 #'
-#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. "Climatologies at high resolution for the earth's land surface areas". In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
+#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth's land surface areas_. In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
 #'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Data from: Climatologies at high resolution for the earth's land surface areas_. En. 2018. DOI: 10.5061/DRYAD.KD1D4. <URL: http://datadryad.org/stash/dataset/doi:10.5061/dryad.kd1d4>.
+#'@references D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth’s land surface areas_ EnviDat. (2021) DOI: 10.16904/envidat.228. <URL: https://www.doi.org/10.16904/envidat.228>.
 #'
 #'@examples
 #' \dontrun{
@@ -36,7 +36,7 @@
 #'@import RCurl
 #'@import ncdf4
 #'@import terra
-#'@importFrom utils unzip download.file txtProgressBar
+#'@importFrom utils unzip download.file txtProgressBar write.table
 #'
 #'
 #'@export
@@ -195,7 +195,7 @@ Chelsa.Clim.download <- function(save.location = "./",
   }
   
   write.table(x = dataDF, 
-              file = normalizePath(paste0(save.location, "/", call.time, "_dataDF.csv"), winslash = "/"), 
+              file = normalizePath(paste0(save.location, "/", call.time, "_downloadDataframe.csv"), winslash = "/"), 
               sep = ";", 
               dec = ".", 
               row.names = F, 
@@ -495,7 +495,6 @@ Chelsa.Clim.download <- function(save.location = "./",
 #'
 #'@note Specifications: <URL: https://chelsa-climate.org/wp-admin/download-page/CHELSA_tech_specification_V2.pdf>
 #'@note More information on Shared Socioeconomic Pathways under <URL: https://www.dkrz.de/en/communication/climate-simulations/cmip6-en/the-ssp-scenarios?set_language=en>
-#'@note Citations not yet updated.Please check Chelsa Website for current citation!
 #'
 #'@examples
 #' \dontrun{

R/auxiliary.R

@@ -385,24 +385,50 @@ save.citation <- function(save.location = "./",
       # citation_  <- RefManageR::ReadCrossRef("")
       
       citation_paper <- RefManageR::ReadCrossRef("10.1038/sdata.2017.122")
+      
       citation_CHELSA_cmip5_ts <- RefManageR::ReadCrossRef("10.1038/s41597-020-00587-y")
       citation_PBCOR <- RefManageR::ReadCrossRef("10.1175/JCLI-D-19-0332.1")
       
+      # citation_envidat.332  <- RefManageR::ReadCrossRef("10.16904/envidat.332") #doi.org/10.16904/envidat.332
+      utils::download.file("https://www.envidat.ch/dataset/bioclim_plus/export/bibtex.bib",
+                           destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
+      citation_envidat.332 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
+      unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+      
+      # citation_envidat.228.v2.1  <- RefManageR::ReadCrossRef("10.16904/envidat.228.v2.1") # doi.org/10.16904/envidat.228.v2.1
+      utils::download.file("https://www.envidat.ch/dataset/chelsa-climatologies/export/bibtex.bib",
+                           destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
+      citation_envidat.228.v2.1 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
+      unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+      
+      # citation_essd2022212  <- RefManageR::ReadCrossRef("10.5194/essd-2022-212") #doi.org/10.5194/essd-2022-212
+      utils::download.file("https://essd.copernicus.org/articles/14/5573/2022/essd-14-5573-2022.bib",
+                           destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
+      citation_essd2022212 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
+      unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+      
+
+      citation_sdata.2017.122 <- RefManageR::ReadCrossRef("10.1038/sdata.2017.122") # 10.1038/sdata.2017.122
       # Data
       citation_data <- RefManageR::ReadCrossRef("10.5061/dryad.kd1d4")
+      
       utils::download.file("https://www.envidat.ch/dataset/eur11/export/bibtex.bib",
                            destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
       citation_EUR11 <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
       unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+      
       utils::download.file("https://www.envidat.ch/dataset/chelsacruts/export/bibtex.bib",
                            destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
       citation_CHELSAcruts_data   <- RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
       unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
+      
       utils::download.file("https://www.envidat.ch/dataset/chelsa_cmip5_ts/export/bibtex.bib",
                            destfile = paste0(tempdir(),"/bib_chelsa.bib"), quiet = T)
       citation_CHELSA_cmip5_ts_data  <-  RefManageR::ReadBib(paste0(tempdir(),"/bib_chelsa.bib"))
       unlink(x = paste0(tempdir(),"/bib_chelsa.bib"))
       
+      
+      
       # Old versions
       citation_Version1.0  <- RefManageR::ReadCrossRef("10.1594/WDCC/CHELSA_v1")
       citation_Version1.1  <- RefManageR::ReadCrossRef("10.1594/WDCC/CHELSA_v1_1")

man/Chelsa.CMIP_6.download.Rd

@@ -72,8 +72,6 @@ Please note that the downloaded data for temperature and the therefore also the
 Specifications: <URL: https://chelsa-climate.org/wp-admin/download-page/CHELSA_tech_specification_V2.pdf>
 
 More information on Shared Socioeconomic Pathways under <URL: https://www.dkrz.de/en/communication/climate-simulations/cmip6-en/the-ssp-scenarios?set_language=en>
-
-Citations not yet updated.Please check Chelsa Website for current citation!
 }
 \examples{
 \dontrun{

man/Chelsa.Clim.download.Rd

@@ -58,8 +58,6 @@ This function supports the download, pre-processing and management of CHELSA cli
 }
 \note{
 Please note that the downloaded data for temperature and the therefore also the first eleven bioclim-variables are processed to °C with one significant decimal without offset and factor. Processing and conversion to other file-formats on a global dataset may take some time.
-
-Citations not yet updated.Please check Chelsa Website for current citation!
 }
 \examples{
 \dontrun{
@@ -71,9 +69,11 @@ Chelsa.Clim.download(parameter = "prec", month.var = c(1,12))
 
 }
 \references{
-D. N. Karger, O. Conrad, J. B{\"o}hner , et al. "Climatologies at high resolution for the earth's land surface areas". In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
+D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth's land surface areas_. In: _Scientific Data_ 4.1 (Sep. 2017). DOI: 10.1038/sdata.2017.122. <URL: https://doi.org/10.1038/sdata.2017.122>.
 
 D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Data from: Climatologies at high resolution for the earth's land surface areas_. En. 2018. DOI: 10.5061/DRYAD.KD1D4. <URL: http://datadryad.org/stash/dataset/doi:10.5061/dryad.kd1d4>.
+
+D. N. Karger, O. Conrad, J. B{\"o}hner , et al. _Climatologies at high resolution for the earth’s land surface areas_ EnviDat. (2021) DOI: 10.16904/envidat.228. <URL: https://www.doi.org/10.16904/envidat.228>.
 }
 \author{
 Helge Jentsch